View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_375 (Length: 202)
Name: NF8521A_low_375
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_375 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 5198052 - 5198193
Alignment:
| Q |
24 |
tcacgtcctttctggttcatcaacacccaccacaacatgtttcaccgttcacgcaaagatctatatcacctcacgttgttgagcaaatgagacaatctaa |
123 |
Q |
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| T |
5198052 |
tcacgtcctttctggttcatcaacagccaccacaacatgtttcaccgttcacgcaaagatctatatcacctcacgttgttgagcaaatgagacaatctaa |
5198151 |
T |
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| Q |
124 |
tggccctaaaaatcacaactcaatttagtcagattctaccaa |
165 |
Q |
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| T |
5198152 |
tggtcctaaaaatcacaactcaatttagtcagattctaccaa |
5198193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 5178414 - 5178372
Alignment:
| Q |
101 |
gttgagcaaatgagacaatctaatggccctaaaaatcacaact |
143 |
Q |
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| T |
5178414 |
gttgagcaaatgaaacaatctaattgtcctaaaaatcacaact |
5178372 |
T |
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