View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_4 (Length: 637)

Name: NF8521A_low_4
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_4
NF8521A_low_4
[»] chr2 (2 HSPs)
chr2 (4-631)||(3295171-3295789)
chr2 (594-631)||(26212324-26212361)


Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 4 - 631
Target Start/End: Complemental strand, 3295789 - 3295171
Alignment:
Q  4 atgttgtttctgtttttaggaccatta---gatatgccaatctttaactaggtaacaaagagtttgttgtcatggccatgtctttgtcacacccttgttg 100  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3295789 atgttgtttctgtttttaggaccattattagatatgccaatctttaactaggtaacaaagggtttgttgtcatggccatgtctttgtcacacccttgttg 3295690  T
Q  101 cttttgaaagattcttgatagcattcagaacaagcaattagtcatgatcgtgcagttttaggagcaagttcccaaaaattcaacaaacaagaggtttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3295689 cttttgaaagattcttgatagcattcagaacaagcaattagtcatgatcgtgcagttttaggagcaagttcccaaaaattcaacaaacaagaggtttcct 3295590  T
Q  201 tcatatgatgtgtataacacattaaaaagtatatatagttgctttcattattacctgttttggtaaaattgttcaatttcagattccaactatatatata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
T  3295589 tcatatgatgtgtataacacattaaaaagtatatatagttgctttcattattacctgttttggtaaaattgttcaatttcagattccaacta----tata 3295494  T
Q  301 gtcaaaatcttctctgtcatcataatccaattgatgatatcaacaaatgggaccatgggccttaaagtaaacaatacaagaaaaaacccaataacccatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3295493 gtcaaaatcttctctgtcatcataatccaattgatgatatcaacaaatggggccatgggccttaaagtaaacaatacaagaaaaaacccaataacccatt 3295394  T
Q  401 atggatacccagaatttacataactctctatctagtaatggaaatgttaaaacacggtacttaagcaagctttatcagtagcaaaaatgttaaacaagag 500  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  3295393 atggatacccaaaatttacataa--ctctatctagtaatggaaatgtt-aaacacagtacttaagcaagctttatcagtagcaaaaatgtt-aacaagag 3295298  T
Q  501 tttttgctaacaaagttaagcagggtaaaaaatcattttgatcttgaatgtgagaagctgtcacactatagtttctgattgtatgtaaattttcaaacac 600  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  3295297 tttttgctaacaaagttaagcagggtaaacaatcattttgatcttgaatgtgagaagctgtcacactatag-ttctgattgtatgtaaattttcaaacat 3295199  T
Q  601 attctcaagtctcttttttgttagtaatttt 631  Q
    |||||||||||   |||||||||||||||||    
T  3295198 attctcaagtc---tttttgttagtaatttt 3295171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 26212324 - 26212361
Alignment:
Q  594 caaacacattctcaagtctcttttttgttagtaatttt 631  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  26212324 caaacacattctcaagtatcttttttgttagtaatttt 26212361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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