View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_42 (Length: 391)
Name: NF8521A_low_42
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_42 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 36495998 - 36495614
Alignment:
| Q |
8 |
cgaagaatataattttatatcagatttacgagaccaaagaggtccgaatttagagctatagcacagggaacatgtaagctattgtggatgaaaattgtgc |
107 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
36495998 |
cgaacaatataattttatatcagacttacgagaccaaagaggtccgaatttagagctatagcacagggaatatgtgagctattgtggatgaaaattgtgc |
36495899 |
T |
|
| Q |
108 |
ttgatggcataatgataaagtatgagaactggatgaagttattttgtgacaataaatcagctcttagtattgcgcataatcttgttcagcatgacagaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36495898 |
ttgatggcataatgataaagtatgagaactggatgaagttatt--gtgacaataaatcagctcttagtattgcgcataatcttgttcagcatgacagaca |
36495801 |
T |
|
| Q |
208 |
aaacacattgcgataaactggcactttatcaaagaaaaaccgaatagcagattgataacaactacccacatccttttaagcaccaattagcaatgtctt- |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
36495800 |
aaacacattgtgataaactggcactttatcaaagaaaaaccaaatagcagattgataacaactacccacatccttttaggcaccaattagcaatgtgtta |
36495701 |
T |
|
| Q |
307 |
--aaaatccacatcaacaaaacgattcagccaacttatatgccagcagggaatgatatccattcactagtttgaggaggattgttgt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36495700 |
acaaaatccacatcaacaaaacgattcagccaacttatatgccagcagggaatgatatccattcactagcttgaggaggattgttgt |
36495614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 7707661 - 7707744
Alignment:
| Q |
135 |
actggatgaagttattttgtgacaataaatcagctcttagtattgcgcataatcttgttcagcatgac-agacaaaacacattg |
217 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||| || |||||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
7707661 |
actgtatgaagttgttttgtggcaataaatcggccattagtattgcttaaaatcttgttcagcatgacaagacaaaacacattg |
7707744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 27471657 - 27471760
Alignment:
| Q |
140 |
atgaagttattttgtgacaataaatcagctcttagtattgcgcataatcttgttcagcatgaca-gacaaaacacattgcgataaactggcactttatca |
238 |
Q |
| |
|
|||||||| ||||||||| | |||||| | ||| |||||| ||||||||||||||| |||| | |||||||||||||| ||| || |||| || |||| |
|
|
| T |
27471657 |
atgaagttgttttgtgactacaaatcatccattaatattgcacataatcttgttcagaatgaaaggacaaaacacattgagattgaccggcatttcatca |
27471756 |
T |
|
| Q |
239 |
aaga |
242 |
Q |
| |
|
|||| |
|
|
| T |
27471757 |
aaga |
27471760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 14302594 - 14302642
Alignment:
| Q |
140 |
atgaagttattttgtgacaataaatcagctcttagtattgcgcataatc |
188 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
14302594 |
atgaagttgttttgtgacaataaatcgaccattagtattgcgcataatc |
14302642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University