View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_44 (Length: 386)

Name: NF8521A_low_44
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_44
NF8521A_low_44
[»] chr5 (21 HSPs)
chr5 (160-375)||(11048013-11048244)
chr5 (22-144)||(10746406-10746528)
chr5 (22-128)||(10612423-10612529)
chr5 (38-142)||(10716365-10716469)
chr5 (33-144)||(10581719-10581830)
chr5 (22-128)||(10605465-10605571)
chr5 (33-144)||(10565727-10565838)
chr5 (22-137)||(7193719-7193834)
chr5 (29-144)||(10739800-10739915)
chr5 (29-128)||(10762231-10762330)
chr5 (29-146)||(10659458-10659575)
chr5 (36-101)||(10587895-10587960)
chr5 (22-102)||(10651619-10651699)
chr5 (38-126)||(9827352-9827440)
chr5 (38-126)||(9835721-9835809)
chr5 (38-142)||(19605243-19605347)
chr5 (40-143)||(10559629-10559732)
chr5 (28-114)||(10551520-10551606)
chr5 (201-264)||(10565949-10566012)
chr5 (22-61)||(10760796-10760835)
chr5 (84-141)||(9849623-9849680)
[»] chr2 (1 HSPs)
chr2 (22-128)||(17922808-17922914)
[»] chr6 (5 HSPs)
chr6 (22-128)||(12958770-12958876)
chr6 (30-128)||(12900273-12900371)
chr6 (22-128)||(12907882-12907988)
chr6 (30-128)||(12949318-12949417)
chr6 (38-128)||(12932987-12933077)
[»] chr3 (1 HSPs)
chr3 (28-128)||(31466548-31466648)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 160 - 375
Target Start/End: Complemental strand, 11048244 - 11048013
Alignment:
Q  160 gatacttgacactttttctcctcattaattgattgcatatcaaaattcctaacctacaaaatacaaaggcaataacgagcttcctcttgatttgaatttc 259  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11048244 gatacttaacactttttctcctcattaattgattgcatatcaaaatttctaacctacaaaatacaaaggcaataacaagcttcctcttgatttgaatttc 11048145  T
Q  260 aggtgttcac----------------actaaatttataaggtcatttgtgggagaagaagtgtctagctggaagcgtgtatgagtgtgttcaatgaattt 343  Q
    ||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11048144 aggtgttcacactcataagtaattgaactaaatttataaggtcatttgtgggagaagaagtgtctagctggaagcgtgtatgagtgtgttcaatgaattt 11048045  T
Q  344 ggtttgcaacattaaattatgtgtgatgatgt 375  Q
    ||||||||| ||||||||||||||||| ||||    
T  11048044 ggtttgcaagattaaattatgtgtgattatgt 11048013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 10746528 - 10746406
Alignment:
Q  22 tccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactaga 121  Q
    ||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  10746528 tccaactgtaaaagagtgtttagtttcactttttaggattggacttatttgtacaattgaatcaccaaaagaaagaatgaatactgtggatgtcactaga 10746429  T
Q  122 gagcttagcataatcagaaaggc 144  Q
    ||||| | |||||||||||||||    
T  10746428 gagctcaacataatcagaaaggc 10746406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 10612423 - 10612529
Alignment:
Q  22 tccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactaga 121  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  10612423 tccaagtttaaaggagtgcttagtttcactttttaggattggacttctttgttcaatggaatcacccaaagaaagaatgaatattgtggatgttactaga 10612522  T
Q  122 gagctta 128  Q
    || ||||    
T  10612523 gaactta 10612529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 10716469 - 10716365
Alignment:
Q  38 tgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatca 137  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| | ||||||||    
T  10716469 tgcttagtttctcttttcaggattggacttgtttgtacaatggaatcaccgatagaaagaatgaatattatggatgtcactagagagctcaacataatca 10716370  T
Q  138 gaaag 142  Q
    |||||    
T  10716369 gaaag 10716365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 10581719 - 10581830
Alignment:
Q  33 aggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcat 132  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||| ||||||   || ||||||||| ||    
T  10581719 aggagtgcttagtttcactttttaggattggacttatgtgttcaatggagtcaccaaaagaaagactgaatattgaggatgtatgtatagagcttagtat 10581818  T
Q  133 aatcagaaaggc 144  Q
    ||||||||||||    
T  10581819 aatcagaaaggc 10581830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 10605465 - 10605571
Alignment:
Q  22 tccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactaga 121  Q
    |||||| |||||||| | |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||| |    
T  10605465 tccaagggtagaggaatccttagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttactaaa 10605564  T
Q  122 gagctta 128  Q
    |||||||    
T  10605565 gagctta 10605571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 10565727 - 10565838
Alignment:
Q  33 aggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcat 132  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || |||| || |||   |||||||||||| ||    
T  10565727 aggagtgcttagtttcactttttaggattggacttatgtgttcaatggagtcaccaaaagaaagaatcaacattgaggttgtatgtagagagcttagtat 10565826  T
Q  133 aatcagaaaggc 144  Q
    ||||||||||||    
T  10565827 aatcagaaaggc 10565838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 7193719 - 7193834
Alignment:
Q  22 tccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactaga 121  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||  |||| || |||||||||||||||||||||||||||| ||||||||||  |||    
T  7193719 tccaaatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtcatcaga 7193818  T
Q  122 gagcttagcataatca 137  Q
    ||  | ||||||||||    
T  7193819 gacttaagcataatca 7193834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 10739915 - 10739800
Alignment:
Q  29 gtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 128  Q
    |||||||| | |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| | |  ||||||||    
T  10739915 gtagaggaatccttagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttaatcaagagctta 10739816  T
Q  129 gcataatcagaaaggc 144  Q
     || |||| |||||||    
T  10739815 acacaatccgaaaggc 10739800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 10762330 - 10762231
Alignment:
Q  29 gtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 128  Q
    |||||||| | |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  10762330 gtagaggaatccttagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttactcaagagctta 10762231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 10659575 - 10659458
Alignment:
Q  29 gtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 128  Q
    |||||| |||||||||||||||||||| |||||||||||   ||| || || ||||||||||||||||||||||||| || |||||||| |||||| | |    
T  10659575 gtagagaagtgcttagtttcactttttcggattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagttgatgtcaccagagagttaa 10659476  T
Q  129 gcataatcagaaaggcat 146  Q
    ||||||||| ||||||||    
T  10659475 gcataatcaaaaaggcat 10659458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 10587960 - 10587895
Alignment:
Q  36 agtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatga 101  Q
    ||||||||||||||||| | ||||||||||||  |||| |||||||||||||||||||||||||||    
T  10587960 agtgcttagtttcacttctaaggattggacttgcttgttcaatggaatcaccaaaagaaagaatga 10587895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 10651699 - 10651619
Alignment:
Q  22 tccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaa 102  Q
    ||||| ||||||| |||| |||||||||||||| ||||||||||||  |||| || || ||||||||||||||||||||||    
T  10651699 tccaactgtagagaagtgtttagtttcacttttcaggattggacttgcttgttcagtgaaatcaccaaaagaaagaatgaa 10651619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 9827440 - 9827352
Alignment:
Q  38 tgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagct 126  Q
    |||||||||||| |||| ||||||||||||   ||| |||  ||||||||||||||||||||||| || || ||||| |||||||||||    
T  9827440 tgcttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgttactagagagct 9827352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 9835809 - 9835721
Alignment:
Q  38 tgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagct 126  Q
    |||||||||||| |||| ||||||||||||   ||| |||  ||||||||||||||||||||||| || || ||||| |||||||||||    
T  9835809 tgcttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgttactagagagct 9835721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 19605347 - 19605243
Alignment:
Q  38 tgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatca 137  Q
    ||||| |||||  |||||||||||||||||   ||| | |||||||| || ||||||||||||||||| |  |||| |||||||||||| | ||||||||    
T  19605347 tgctttgtttccatttttaggattggacttgcctgttcgatggaatctcccaaagaaagaatgaatatagaagatgccactagagagctaaacataatca 19605248  T
Q  138 gaaag 142  Q
    |||||    
T  19605247 gaaag 19605243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 10559629 - 10559732
Alignment:
Q  40 cttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcaga 139  Q
    |||||||||||| |||||||||||||||   ||| |  ||||||| |||| | |||||||||||||  |||||||||||||||| || | ||| ||||||    
T  10559629 cttagtttcactctttaggattggacttgcatgttcggtggaatcgccaacacaaagaatgaatatattggatgtcactagagaactaaacatgatcaga 10559728  T
Q  140 aagg 143  Q
    ||||    
T  10559729 aagg 10559732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 10551520 - 10551606
Alignment:
Q  28 tgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgt 114  Q
    ||||||| | || ||| |||||||| ||||||||| ||||  |||| || |||||||||||||||||||||||||||| || |||||    
T  10551520 tgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 10551606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 10565949 - 10566012
Alignment:
Q  201 aaaattcctaacctacaaaatacaaaggcaataacgagcttcctcttgatttgaatttcaggtg 264  Q
    ||||||||||| ||||||||||||| || ||||| |   ||| |||||||||||||||||||||    
T  10565949 aaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggtg 10566012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 10760835 - 10760796
Alignment:
Q  22 tccaagtgtagaggagtgcttagtttcactttttaggatt 61  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  10760835 tccaagtgtagagaagtgcttagtttcactgtttaggatt 10760796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 9849680 - 9849623
Alignment:
Q  84 caccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaa 141  Q
    |||| |||| |||||||||||   ||||||||||||||||||| | ||||||||||||    
T  9849680 caccgaaagcaagaatgaatacaatggatgtcactagagagctaaacataatcagaaa 9849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 17922914 - 17922808
Alignment:
Q  22 tccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactaga 121  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  17922914 tccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactaga 17922815  T
Q  122 gagctta 128  Q
    |||||||    
T  17922814 gagctta 17922808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 12958770 - 12958876
Alignment:
Q  22 tccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactaga 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  12958770 tccaactgtagaggagtgcttagtttcactttttaggattggacttttatgttcattggaatcaccaaaagaaagaatgaatattgtcgatgtcactaga 12958869  T
Q  122 gagctta 128  Q
    |||||||    
T  12958870 gagctta 12958876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 12900273 - 12900371
Alignment:
Q  30 tagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 128  Q
    |||| |||||||||||||||||| ||||||||| |||| | ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12900273 tagaagagtgcttagtttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 12900371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 12907882 - 12907988
Alignment:
Q  22 tccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactaga 121  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||| | ||| || |||||||| |||||||||||||||||||||| ||||||| ||||    
T  12907882 tccaaatgtagaggagtgcttaacttcactttttaggattggacttttatgttcattggaatcaacaaaagaaagaatgaatattgtagatgtcaataga 12907981  T
Q  122 gagctta 128  Q
    |||||||    
T  12907982 gagctta 12907988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 12949318 - 12949417
Alignment:
Q  30 tagaggagtgcttagtttcac-tttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 128  Q
    |||| ||||||| |||||| | ||||||||||||||||| ||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  12949318 tagaagagtgctcagtttcccctttttaggattggacttttttgttcattggaatcatcaaatgaaagaatgaatattgtggatgtcactagagagctta 12949417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 12932987 - 12933077
Alignment:
Q  38 tgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 128  Q
    ||||| ||||||||| ||||||||| |||| | ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12932987 tgctttgtttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 12933077  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 31466648 - 31466548
Alignment:
Q  28 tgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctt 127  Q
    ||||||| | || ||| ||||||||||||| |||| ||||  |||| |||||||||||||||||||||| |||| ||| || || |||| ||||||||||    
T  31466648 tgtagagaaatgtttaatttcactttttagtattgcacttggttgttcaatggaatcaccaaaagaaaggatgagtatggttgaagtcattagagagctt 31466549  T
Q  128 a 128  Q
    |    
T  31466548 a 31466548  T

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