View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_46 (Length: 384)
Name: NF8521A_low_46
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_46 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 22 - 384
Target Start/End: Original strand, 43061800 - 43062162
Alignment:
| Q |
22 |
catgatggtataacatgtttaacaatgaatgaataaacaaataacaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43061800 |
catgatggtataacatgtttaacaatgaatgaataaacaaataaaaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaat |
43061899 |
T |
|
| Q |
122 |
aaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttgtcgggcaaaacccgggtgaaggtaaaggttgcattattgtttaa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43061900 |
aaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttttcgggcaaaacccgggtgaaggtaaaggttgcattattgtttga |
43061999 |
T |
|
| Q |
222 |
tttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatag |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43062000 |
tttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatag |
43062099 |
T |
|
| Q |
322 |
ataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtacc |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43062100 |
ataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtacc |
43062162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 380
Target Start/End: Original strand, 43054751 - 43054907
Alignment:
| Q |
224 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
323 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||| ||| | | | ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
43054751 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
43054850 |
T |
|
| Q |
324 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
380 |
Q |
| |
|
| |||||||||||||| |||| |||||| |||| ||||| | ||||||||||||||| |
|
|
| T |
43054851 |
atcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgag |
43054907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 380
Target Start/End: Original strand, 43049217 - 43049373
Alignment:
| Q |
224 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
323 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||||||| | |||||| | || |||||| ||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
43049217 |
tcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
43049316 |
T |
|
| Q |
324 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
380 |
Q |
| |
|
| |||||||| || |||||||||||||| | || || ||||||||||| ||||||| |
|
|
| T |
43049317 |
atcataaacttcatcactcttgtctttgttaaactcggagacttgatcgctgtcgag |
43049373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 43024145 - 43024222
Alignment:
| Q |
303 |
gaagtagagcttcacatagataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
380 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||||| |||||| | || || |||||||||| ||||||||| |
|
|
| T |
43024145 |
gaagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgag |
43024222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University