View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_52 (Length: 379)
Name: NF8521A_low_52
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 8946827 - 8947195
Alignment:
| Q |
7 |
accaaagaaaaatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgta |
106 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946827 |
accaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgta |
8946926 |
T |
|
| Q |
107 |
ttaatgttcgaatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaattgttggtatttgcaaattgac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
8946927 |
ttaatgttcgaatttttcgcagataaccctttattgaagaatcttgctccaatgagtttcttgttgcaaaatgatgaattgttgctattttcaaattgac |
8947026 |
T |
|
| Q |
207 |
ataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaaccaataatgac |
306 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8947027 |
ataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactctcgggccaaacacctgagtcaatcaaaccaataatgac |
8947126 |
T |
|
| Q |
307 |
atcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8947127 |
atcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
8947195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 7 - 376
Target Start/End: Complemental strand, 8973668 - 8973299
Alignment:
| Q |
7 |
accaaagaaaaatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgta |
106 |
Q |
| |
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||||||||| ||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||| | ||||| ||||| || |
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|
| T |
8973668 |
accaaagaatgatgcaccatcaacttgattcccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaattgtgtta |
8973569 |
T |
|
| Q |
107 |
ttaatgttcgaatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaattgttggtatttgcaaattgac |
206 |
Q |
| |
|
| | || | || ||| || | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
8973568 |
gttagatttggatattttgccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattgttggtattttcaaattgac |
8973469 |
T |
|
| Q |
207 |
ataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaaccaataatgac |
306 |
Q |
| |
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|||| | |||||||||||||||||| |||| || ||| ||||||| || |||||||||||||| ||||||||||| | ||||||| ||||| |||||| |
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| T |
8973468 |
ataattgccctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaacaccggtatcaatcataccaacaatgac |
8973369 |
T |
|
| Q |
307 |
atcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtga |
376 |
Q |
| |
|
||||| ||| | | |||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
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|
| T |
8973368 |
atctttgccataatcagaagctggccatgcccctttgtatgaattaaggccaaggaattgtggtgagtga |
8973299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 8962255 - 8961899
Alignment:
| Q |
18 |
atgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtattaatgttcga |
117 |
Q |
| |
|
||||||||| ||| ||||| || ||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| |||| | || |
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|
| T |
8962255 |
atgcaccattaacctgattccccgctaccgttgttgaagtgtgggttccatgaccatctgtgtcacgtgtagagttcactgttgttgtatcaatggtgga |
8962156 |
T |
|
| Q |
118 |
atttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccct |
217 |
Q |
| |
|
||| |||| | |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
8962155 |
attcatcgccaagaaccctttgttgaagaatcttgctccaatgagttttttgttgcaaaaagatgaattgttggtattttcaaattgacataatttccct |
8962056 |
T |
|
| Q |
218 |
ttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaa |
317 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||| |||||||||||||| ||||||||||| | ||||||| ||||| ||||||||||| ||| |
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|
| T |
8962055 |
ttccattttgaaggaattttagtaaatccattatcattgaaactttcactttctggccaaacaccggtatcaatcacaccaacaatgacatcttttccat |
8961956 |
T |
|
| Q |
318 |
acttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagt |
374 |
Q |
| |
|
| | ||||||| |||| |||||| | ||||| || ||||||||||| ||||||| |
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|
| T |
8961955 |
aatcagaagctagccacacccctttgtagggattaagaccaaggaattgaggtgagt |
8961899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 9950139 - 9950244
Alignment:
| Q |
7 |
accaaagaaaaatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || |||| |||||||||||| | | | ||| ||| | || |||||| ||||| ||||||||| |
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|
| T |
9950139 |
accaaagaaaaatgcaccatcaacttgatttcaagttgttgttaatgaagtgtgggtctcttaatcatatgtatgacatgtagtattcacaattgttgta |
9950238 |
T |
|
| Q |
107 |
ttaatg |
112 |
Q |
| |
|
|||||| |
|
|
| T |
9950239 |
ttaatg |
9950244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 8957140 - 8957087
Alignment:
| Q |
134 |
cctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaattg |
187 |
Q |
| |
|
||||| ||||||||| | || |||||||||||||||||||||| ||||||||| |
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|
| T |
8957140 |
cctttgttgaagaatttggcaccaatgagtttcttgttgcaaagagatgaattg |
8957087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 21687967 - 21688346
Alignment:
| Q |
8 |
ccaaagaaaaatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtat |
107 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||||||||||||||| || || || ||||| |||||||||||||| | ||||| ||||||||| |
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|
| T |
21687967 |
ccaaagaaagatgcaccatcaactttgcttccagctgctgttgttgaagtatgtgtcccgtgaccgtttgtgtcacgtgtggagttcaaaattgttgtac |
21688066 |
T |
|
| Q |
108 |
taatgttcgaatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaattg------------ttggtatt |
195 |
Q |
| |
|
||||||| || | ||| || | || ||||| |||||||| |||||||||||||||||||||||||| || ||| ||||| |||| ||| |
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|
| T |
21688067 |
taatgttggagtgttttgccaagaagcctttgttgaagaacctagctccaatgagtttcttgttgcacaaagataaattgattgactggatgttggaatt |
21688166 |
T |
|
| Q |
196 |
tgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaa |
295 |
Q |
| |
|
||||||||||||| | |||||||||||||| || |||||||||||||||| ||| |||||||||||||||| ||||||||||| | ||| || | | |
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|
| T |
21688167 |
ctcaaattgacataattggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacaccagtgtctattaca |
21688266 |
T |
|
| Q |
296 |
ccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
375 |
Q |
| |
|
|||| ||||| ||||| |||||| | ||||| ||||||||||||| | ||||||| |||||||| ||||| |||||||| |
|
|
| T |
21688267 |
ccaacaatgatatctttaccaaaatcagaagttggccatgcccctctatatggattaaggccaagaaattgaggtgagtg |
21688346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 34963779 - 34963857
Alignment:
| Q |
215 |
cctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatca |
293 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| || || || |||||||| |||||||| |||| |||||||| |
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|
| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaactcctgtgtcaatca |
34963857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 34963707 - 34963754
Alignment:
| Q |
140 |
ttgaagaatctagctccaatgagtttcttgttgcaaaatgatgaattg |
187 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34963707 |
ttgaagaatttagctccaatgagtttcttgttgcaaagagatgaattg |
34963754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 34963606 - 34963657
Alignment:
| Q |
36 |
ttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgt |
87 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||| | |||||||||||| |
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|
| T |
34963606 |
ttccagctgctgttgttgaagtatgagttccatgaccttctgtgtcacgtgt |
34963657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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