View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_6 (Length: 600)
Name: NF8521A_low_6
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 6 - 581
Target Start/End: Original strand, 31701104 - 31701680
Alignment:
| Q |
6 |
gtttggtgttatactagttcttatggtctttgggatgattcaggtattatgatttttaaacttcaatgtactatttcaccctttaattttctggctacat |
105 |
Q |
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| T |
31701104 |
gtttggtgctatactagttcttatggtctttgggatgattcaggtattatgattttaaaacttcaatgtactatttcaccgtttaattttctggctacat |
31701203 |
T |
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| Q |
106 |
tctca-gtgtgnnnnnnngcctgcagattttctttccattgggcaagttatctacaatgatctatggttgcttggcagcaattatattttgcggctacat |
204 |
Q |
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| T |
31701204 |
tctcaagtgtgtttttttgcctgcagattttctttccattgggcaagttatctacaatgatctatggttgcttggcagcaattatattttgtggctacat |
31701303 |
T |
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| Q |
205 |
cctatatgatacagacaacttgatcaagagatactcttatgatgaattcatttgggcttctgtctccttatatttggacatcatcaaccttttcctgtct |
304 |
Q |
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| T |
31701304 |
cctatatgatacagacaacttgatcaagagatactcttatgatgaattcatttgggcttctgtctccttatatttggacatcatcaaccttttcctgtct |
31701403 |
T |
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| Q |
305 |
ttgctgactattttcagagctgctgatagttgaagtccttgtactcattggtacgtactggttgttttctgatggggggttagtggtatacgaaaacaag |
404 |
Q |
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| T |
31701404 |
ttgctcactattttcagagctgctgatagttgaagtccttgtacttattggtacgtactagttgttttctgatggggggttagtggtatacgaaaacaag |
31701503 |
T |
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| Q |
405 |
ttcttatctggtaataaatctttgtggcttccatgttgcacctgtttcttgtactggattatcacactactgttaaggctgttgatacatattactgtag |
504 |
Q |
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| T |
31701504 |
ttcttatctgttaataaatctttgtggcttccatgttgcacctgtttctcgtactggattatcacactactgttaaggctgttgatacatattactgtag |
31701603 |
T |
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| Q |
505 |
ttgattaacgatgttattttgaattgtaaatacgttcttgaacactgttctcttgattcattgttctcttgaatgtg |
581 |
Q |
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| T |
31701604 |
ttgattaacgatgttattttgaattgtaaatacgttcttgaacactgttctcttgattcattgttctcttgaatgtg |
31701680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 126 - 328
Target Start/End: Complemental strand, 38313070 - 38312868
Alignment:
| Q |
126 |
tgcagattttctttccattgggcaagttatctaca-atgatctatggttgcttggcagcaattatattttgcggctacatcctatatgatacagacaact |
224 |
Q |
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| T |
38313070 |
tgcagattctgtttccattgggaaagttgtc-acatatgatctatgggtgtcttgcagctattatattttctggctacattgtctatgacacagacaacc |
38312972 |
T |
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| Q |
225 |
tgatcaagagatactcttatgatgaattcatttgggcttctgtctccttatatttggacatcatcaaccttttcctgtctttgctgactattttcagagc |
324 |
Q |
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| T |
38312971 |
ttatcaagaggtactcctatgatgagtatatctgggcttctgtctccttatatctagatgtcatcaacctcttcctctctctacttactgtttttagagc |
38312872 |
T |
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| Q |
325 |
tgct |
328 |
Q |
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|||| |
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| T |
38312871 |
tgct |
38312868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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