View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_69 (Length: 354)
Name: NF8521A_low_69
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_69 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 21 - 354
Target Start/End: Complemental strand, 29013767 - 29013434
Alignment:
| Q |
21 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
120 |
Q |
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| T |
29013767 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29013668 |
T |
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| Q |
121 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
220 |
Q |
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| T |
29013667 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29013568 |
T |
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| Q |
221 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaggagtttcttgctaaagggttgctg |
320 |
Q |
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| T |
29013567 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
29013468 |
T |
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| Q |
321 |
aatgatgagggtttaaggcaagggagtgaagaag |
354 |
Q |
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| T |
29013467 |
aatgatgagggtttaaggcaagggagtgaagaag |
29013434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 354
Target Start/End: Complemental strand, 29366455 - 29366122
Alignment:
| Q |
21 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
120 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366455 |
gaaatatgcttaatatcagctcgaggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29366356 |
T |
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| Q |
121 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366355 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29366256 |
T |
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| Q |
221 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaggagtttcttgctaaagggttgctg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29366255 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
29366156 |
T |
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| Q |
321 |
aatgatgagggtttaaggcaagggagtgaagaag |
354 |
Q |
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| T |
29366155 |
aatgatgagggtttaaggcaagggagtgaagaag |
29366122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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