View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_70 (Length: 354)

Name: NF8521A_low_70
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_70
NF8521A_low_70
[»] scaffold0128 (2 HSPs)
scaffold0128 (12-220)||(18871-19078)
scaffold0128 (221-346)||(18554-18679)
[»] chr8 (2 HSPs)
chr8 (256-343)||(13580396-13580485)
chr8 (291-343)||(28376659-28376711)
[»] chr1 (2 HSPs)
chr1 (258-343)||(8246762-8246847)
chr1 (258-343)||(1240429-1240514)
[»] chr6 (1 HSPs)
chr6 (258-343)||(12174322-12174407)
[»] chr5 (1 HSPs)
chr5 (258-343)||(16570538-16570623)
[»] chr4 (2 HSPs)
chr4 (290-343)||(47059692-47059745)
chr4 (290-343)||(47082057-47082110)
[»] chr2 (1 HSPs)
chr2 (258-343)||(40876967-40877052)


Alignment Details
Target: scaffold0128 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 19078 - 18871
Alignment:
Q  12 acatcaagagagccattaatgccttaactagaacggatacgatggcaactataactataacaataattcagtatcagatttgcttcaaaccagattacaa 111  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19078 acatcaagagagccattaatgtcttaactagaacagatacgatggcaactataactataacaataattcagtgtcagatttgcttcaaaccagattacaa 18979  T
Q  112 tgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgctactcagttcaattccctccttctttgtatcatcaattcttggctttgcaggt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18978 tgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgatactcagttcaattccctccttctttg-atcatcaattcttggctttgcaggt 18880  T
Q  212 ttggttacc 220  Q
    |||||||||    
T  18879 ttggttacc 18871  T

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Target: scaffold0128; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 18679 - 18554
Alignment:
Q  221 attatttcattatccacataattaataacttaacattaaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  18679 attatttcattatccacataattaataacttaacattaaatatttattttatagaattattcaaagcaagttaaaaagaaatacatgtatataccactaa 18580  T
Q  321 ctaatgagtaaaaatattaatttcag 346  Q
    ||||| ||||||||||||||||||||    
T  18579 ctaataagtaaaaatattaatttcag 18554  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 13580396 - 13580485
Alignment:
Q  256 ttaaatatatatttt--atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaatgagtaaaaatattaattt 343  Q
    ||||| |||||||||  ||||||||| ||| ||| | ||||||||||||| || |||||| ||||||||| | |||||||||| ||||||    
T  13580396 ttaaaaatatattttcaatagaattaatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataattt 13580485  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 28376711 - 28376659
Alignment:
Q  291 ttaaaaagaaatacatgtatatactactaactaatgagtaaaaatattaattt 343  Q
    ||||||||||||| || |||||| ||||||||| | |||||||||| ||||||    
T  28376711 ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 28376659  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 8246762 - 8246847
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaatgagtaaaaatattaattt 343  Q
    |||||||| ||  ||||||||| ||| | ||| ||||||||||||| || |||||| ||||||||| | |||||||||| ||||||    
T  8246762 aaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaataataattt 8246847  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 1240514 - 1240429
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaatgagtaaaaatattaattt 343  Q
    |||||||| ||  ||||||||| ||| |||   ||||||||||||| || |||||| ||||||||| | |||||||||| ||||||    
T  1240514 aaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatttatatagtactaactactaagtaaaaataataattt 1240429  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 12174407 - 12174322
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaatgagtaaaaatattaattt 343  Q
    |||||||| ||| ||| ||||| ||| | | | ||||||||||||| || |||||| ||||||||| | |||||||||| ||||||    
T  12174407 aaatatatttttaatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 12174322  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 16570538 - 16570623
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaatgagtaaaaatattaattt 343  Q
    |||||||| ||| ||||||||| ||| ||  | ||||||||||||| || |||||  ||| ||||||| |||||||||| ||||||    
T  16570538 aaatatatttttaatagaattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattt 16570623  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 47059745 - 47059692
Alignment:
Q  290 gttaaaaagaaatacatgtatatactactaactaatgagtaaaaatattaattt 343  Q
    |||||||||||||| || | |||| ||||||||||| |||||||||| ||||||    
T  47059745 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47059692  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 47082057 - 47082110
Alignment:
Q  290 gttaaaaagaaatacatgtatatactactaactaatgagtaaaaatattaattt 343  Q
    |||||||||||||| || | |||| ||||||||||| |||||||||| ||||||    
T  47082057 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47082110  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 40876967 - 40877052
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaatgagtaaaaatattaattt 343  Q
    |||||||| ||  ||||||||| ||  | ||||||||||||||||| || |||||| |||||||||   |||||||||| ||||||    
T  40876967 aaatatattttcaatagaattaatccaaacaagttaaaaagaaatatatttatataatactaactaccaagtaaaaataataattt 40877052  T

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