View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_71 (Length: 353)
Name: NF8521A_low_71
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_71 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 23831750 - 23832088
Alignment:
| Q |
15 |
ctcagtagctcaagtaatactgaggtaccaacagtatcggtgcctcagactgctcggggtgtggaggagatcttacaatcaaccaatttgaagagcttta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23831750 |
ctcagtagctcaagtaatactgaggtaccaacagtatcggtgcctcagactgctcggggtgtggaggagatcttacaatcaaccaatttgaagagcttta |
23831849 |
T |
|
| Q |
115 |
cttctactgaacttcaggttgcaacaagaaatttccgtgtagacagtgtcttgggacatagtgttttcaagggttggattgatgaacactcatcttctgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23831850 |
cttctactgaacttcaggttgcaacaagaaatttccgtgtagacagtgtcttgggacatagtgttttcaagggttggattgatgaacactcatcttctgc |
23831949 |
T |
|
| Q |
215 |
tgccaaacccggcaaaggcattgctgctgctgtcaaaagactttatcaggatggcttcaaaggtcacaaggagttgtttgtaagtttaacttatcttatc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23831950 |
tgccaaacccggcaaaggcattgctgctgctgtcaaaagactttatcaggatggcttcaaaggtcacaaggagttgtttgtaagtttaacttatcttatt |
23832049 |
T |
|
| Q |
315 |
aacaagcaagcactgactatgttgcagtgttttcaaata |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23832050 |
aacaagcaagcactgactatgttgcagtgttttcaaata |
23832088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 48 - 305
Target Start/End: Original strand, 23827782 - 23828051
Alignment:
| Q |
48 |
gtatcggtgcctcagactgctcggggtgtggaggagatcttacaatcaaccaatttgaagagctttacttctactgaacttcaggttgcaacaagaaatt |
147 |
Q |
| |
|
||||||||||| |||||| || | |||||| |||||| || |||||| |||||||||||||||| |||| || ||||||||| |||||| ||||||| |
|
|
| T |
23827782 |
gtatcggtgccacagactcttccgcgtgtgggggagatgttgcaatcatccaatttgaagagcttcactttgacagaacttcagaatgcaactagaaatt |
23827881 |
T |
|
| Q |
148 |
tccgtgtagacagtgtcttgggacatagtg------------ttttcaagggttggattgatgaacactcatcttctgctgccaaacccggcaaaggcat |
235 |
Q |
| |
|
| ||||| |||||||| || ||| || ||| |||| |||||||||||||||||||| |||||||||||||| ||||| |||| |||||| |
|
|
| T |
23827882 |
ttcgtgtggacagtgtgttaggagatggtgattttggatcagtttttaagggttggattgatgaacattcatcttctgctgcaaaacctggcacaggcat |
23827981 |
T |
|
| Q |
236 |
tgctgctgctgtcaaaagactttatcaggatggcttcaaaggtcacaaggagttgtttgtaagtttaact |
305 |
Q |
| |
|
||||| |||||||||||||||| |||| ||| | |||||||||||||| |||| | |||||||||||| |
|
|
| T |
23827982 |
tgctgttgctgtcaaaagacttcatcaagattgtttcaaaggtcacaacaagttcatggtaagtttaact |
23828051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 83 - 323
Target Start/End: Original strand, 23818622 - 23818874
Alignment:
| Q |
83 |
gatcttacaatcaaccaatttgaagagctttacttctactgaacttcaggttgcaacaagaaatttccgtgtagacagtgtcttgggacatagtg----- |
177 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| ||| || ||| |||||| ||| || ||||||||||||||||||||||| || ||| || ||| |
|
|
| T |
23818622 |
gatcttgcaatcgtccaatttgaagaactttgctttgacagaaattcaggctgctacgagaaatttccgtgtagacagtgtgttaggagatggtgatttt |
23818721 |
T |
|
| Q |
178 |
-------ttttcaagggttggattgatgaacactcatcttctgctgccaaacccggcaaaggcattgctgctgctgtcaaaagactttatcaggatggct |
270 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||| ||| |||||||||||||||| | ||||||||| |
|
|
| T |
23818722 |
ggatcagtttttaagggttggattgatgaacgttcatcttctgctgccaaacctggcacaggcattactgttgctgtcaaaagacttaaccaggatggcc |
23818821 |
T |
|
| Q |
271 |
tcaaaggtcacaaggagttgtttgtaagtttaacttatcttatcaacaagcaa |
323 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||| |||| || || |||||| |
|
|
| T |
23818822 |
tcaaaggtcacaatgagttgttggttagtttaactcatctaattaagaagcaa |
23818874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 268
Target Start/End: Original strand, 23823889 - 23824089
Alignment:
| Q |
80 |
ggagatcttacaatcaaccaatttgaagagctttacttctactgaacttcaggttgcaacaagaaatttccgtgtagacagtgtcttgggacatagtg-- |
177 |
Q |
| |
|
||||||||| |||||| ||||||||||||| ||||||| || |||||||||| |||||| |||||||| |||||||||| ||| || ||| || | | |
|
|
| T |
23823889 |
ggagatcttgcaatcatccaatttgaagagttttactttgacagaacttcaggctgcaactagaaattttcgtgtagacattgtgttaggagatggcgat |
23823988 |
T |
|
| Q |
178 |
----------ttttcaagggttggattgatgaacactcatcttctgctgccaaacccggcaaaggcattgctgctgctgtcaaaagactttatcaggatg |
267 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||| | |||||||||||||||| |||| |||| |
|
|
| T |
23823989 |
tttggatcagtttttaagggccggattgatgaacactcactttctgctgccaaacctggcacaggcattgccgttgctgtcaaaagacttaatcaagatg |
23824088 |
T |
|
| Q |
268 |
g |
268 |
Q |
| |
|
| |
|
|
| T |
23824089 |
g |
23824089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 41448095 - 41448221
Alignment:
| Q |
177 |
gttttcaagggttggattgatgaacactcatcttctgctgccaaacccggcaaaggcattgctgctgctgtcaaaagactttatcaggatggcttcaaag |
276 |
Q |
| |
|
||||| ||||||||||||||||| | |||| ||||||||||||| |||| |||||| | |||| ||||||||||| |||| |||||||| ||| |
|
|
| T |
41448095 |
gtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactagcattgttattgctatcaaaagacttcatcaagatggcttacaag |
41448194 |
T |
|
| Q |
277 |
gtcacaaggagttgtttgtaagtttaa |
303 |
Q |
| |
|
|||||| ||||| ||| || ||||||| |
|
|
| T |
41448195 |
gtcacagggagtggttggtgagtttaa |
41448221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 41458469 - 41458595
Alignment:
| Q |
177 |
gttttcaagggttggattgatgaacactcatcttctgctgccaaacccggcaaaggcattgctgctgctgtcaaaagactttatcaggatggcttcaaag |
276 |
Q |
| |
|
||||| ||||||||||||||||| | |||| ||||||||||||||| |||| ||||||| | |||| ||||||| ||| |||| || ||||| | |
|
|
| T |
41458469 |
gtttttaagggttggattgatgagaattcattttctgctgccaaacctggcattggcattgttattgctatcaaaagccttaatcaagaaagcttccgaa |
41458568 |
T |
|
| Q |
277 |
gtcacaaggagttgtttgtaagtttaa |
303 |
Q |
| |
|
|||||| ||||| ||| || ||||||| |
|
|
| T |
41458569 |
gtcacagggagtggttggttagtttaa |
41458595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University