View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_73 (Length: 352)
Name: NF8521A_low_73
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 23831750 - 23831950
Alignment:
| Q |
15 |
ctcagtagctcaagtaatactgaggtaccaacagtatcggtgcctcagactgctcggggtgtggaggagatcttacaatcaaccaatttgaagagcttta |
114 |
Q |
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| T |
23831750 |
ctcagtagctcaagtaatactgaggtaccaacagtatcggtgcctcagactgctcggggtgtggaggagatcttacaatcaaccaatttgaagagcttta |
23831849 |
T |
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| Q |
115 |
cttctactgaacttcaggttgcaacaagaaatttccgtgtagacagtgtcttgggacatagtgttttcaagggttggattgatgaacactcatcttctgc |
214 |
Q |
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| T |
23831850 |
cttctactgaacttcaggttgcaacaagaaatttccgtgtagacagtgtcttgggacatagtgttttcaagggttggattgatgaacactcatcttctgc |
23831949 |
T |
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| Q |
215 |
t |
215 |
Q |
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| T |
23831950 |
t |
23831950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 23832207 - 23832064
Alignment:
| Q |
209 |
ttctgctacgttacagcactacaacgccactatagccgctatttgacacaagtctatactaaatagcttatcgcggaataatggtgatttgttcaattta |
308 |
Q |
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| T |
23832207 |
ttctgctacgttacaacactataacgccactatagctgctatttgacaaaagtctatactaaatagcttatcacggaataacggtgatttgctcaattta |
23832108 |
T |
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| Q |
309 |
tgctatgctatagctccactatttgaaaacactgcaacatagtc |
352 |
Q |
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| T |
23832107 |
tgctatgctatagctccgctatttgaaaacactgcaacatagtc |
23832064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 23823889 - 23823968
Alignment:
| Q |
80 |
ggagatcttacaatcaaccaatttgaagagctttacttctactgaacttcaggttgcaacaagaaatttccgtgtagaca |
159 |
Q |
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| T |
23823889 |
ggagatcttgcaatcatccaatttgaagagttttactttgacagaacttcaggctgcaactagaaattttcgtgtagaca |
23823968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 23827782 - 23827897
Alignment:
| Q |
48 |
gtatcggtgcctcagactgctcggggtgtggaggagatcttacaatcaaccaatttgaagagctttacttctactgaacttcaggttgcaacaagaaatt |
147 |
Q |
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| T |
23827782 |
gtatcggtgccacagactcttccgcgtgtgggggagatgttgcaatcatccaatttgaagagcttcactttgacagaacttcagaatgcaactagaaatt |
23827881 |
T |
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| Q |
148 |
tccgtgtagacagtgt |
163 |
Q |
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| T |
23827882 |
ttcgtgtggacagtgt |
23827897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 23818622 - 23818702
Alignment:
| Q |
83 |
gatcttacaatcaaccaatttgaagagctttacttctactgaacttcaggttgcaacaagaaatttccgtgtagacagtgt |
163 |
Q |
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| T |
23818622 |
gatcttgcaatcgtccaatttgaagaactttgctttgacagaaattcaggctgctacgagaaatttccgtgtagacagtgt |
23818702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 23827923 - 23827961
Alignment:
| Q |
177 |
gttttcaagggttggattgatgaacactcatcttctgct |
215 |
Q |
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| T |
23827923 |
gtttttaagggttggattgatgaacattcatcttctgct |
23827961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 343
Target Start/End: Original strand, 50402645 - 50402750
Alignment:
| Q |
238 |
ctatagccgctatttgacacaagtctatactaaatagcttatcgcggaataatggtgatttgttcaatttatgctatgctatagctccactatttgaaaa |
337 |
Q |
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| T |
50402645 |
ctatagctgctatttgacaacactttatactaaatagcatattgcggaacaatagtgatttgttcagatcatgctatgctgtatagccgctatttgacaa |
50402744 |
T |
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| Q |
338 |
cactgc |
343 |
Q |
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| T |
50402745 |
cactgc |
50402750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 8344619 - 8344563
Alignment:
| Q |
265 |
tactaaatagcttatcgcggaataatggtgatttgttcaatttatgctatgctatag |
321 |
Q |
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| T |
8344619 |
tactaaatagcttattgtggaaaaatagtggtttgttcaaattctgctatgctatag |
8344563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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