View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_74 (Length: 351)
Name: NF8521A_low_74
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_74 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 5859608 - 5859267
Alignment:
| Q |
10 |
ataattcttaattagagatctcctcggagatttttcattatcgtcacgccactcacatagtgggtctaaaatatgtgctgtattaagtcctgatgtgagc |
109 |
Q |
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| T |
5859608 |
ataattcttaattagagatctcctcggagatttttcattatcgtcacgccactcacatagtgggtctaaaatatgtgctgtattaagtcctgatgtgagc |
5859509 |
T |
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| Q |
110 |
tgtgaaaaatagaagaatgatgttcatttttgtaactagtaattctactcgcgaaatttgacaaaaataaaataaacatatacctcactgaatgaattga |
209 |
Q |
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| T |
5859508 |
tgtgaaaaatagaagaatgatgttcatttttgtaactagtaattctactcgcgaaatttgacaaaaataaaataaacatatacctcactgaatgaattga |
5859409 |
T |
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| Q |
210 |
tatctttggaacataaaacatttctggtctctgcatttacatagtctccgttacaannnnnnngcagtgactacaaaatagcagatatcaattagttagc |
309 |
Q |
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| T |
5859408 |
tatctttggaacataaaacatttctggtctctgcatttacatagtctccgttacaatttttttgcagtgactacaaaatagcagatatcaattagttagc |
5859309 |
T |
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| Q |
310 |
gtatatctcagtgcttcataggtttttcgatctaagtatagc |
351 |
Q |
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| T |
5859308 |
gtatatctcagtgcttcataggtttttcgatctaagtatagc |
5859267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 305
Target Start/End: Complemental strand, 5866190 - 5865901
Alignment:
| Q |
23 |
agagatctcctcggagatttttcattatcgtcacgccactcacatagtgggtctaaaatatgtgctgtattaagtcctgatgtgagctgtgaaaaataga |
122 |
Q |
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| T |
5866190 |
agagatctccttggagaattttcagtattatcaagccactcacaactcggctctaaaatatgtggttcatgaattcctgatgtgacctgtggaaaaaaga |
5866091 |
T |
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| Q |
123 |
a--gaatgatgttcatttttgtaactagtaattctactcgcgaaatttgacaaaaataaa-----ataaacatatacctcactgaatgaattgatatctt |
215 |
Q |
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| T |
5866090 |
aaagaatgttgttcggttttgtgactagaaactctactcgcgaaatttgacaaaaataaacagaggaaaatctatacctcatcgaatgaactgatatctc |
5865991 |
T |
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| Q |
216 |
tggaacataaaacatttctggtctctgcatttacatagtctccgttacaannnnnnngcagtgactacaaaatagcagatatcaattagt |
305 |
Q |
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| T |
5865990 |
tagaacataaaacatttcttgtctctacatttatgtagtctccattacaatttttttgtagtgactacaaagtagcagatatcagttagt |
5865901 |
T |
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