View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_75 (Length: 351)
Name: NF8521A_low_75
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 6261183 - 6261361
Alignment:
| Q |
8 |
ccaagaaaataattgtttttctttatgtaccactttgctatagaaaactgatgaagacataaagaggttctattttttgttgaattacggtaggtgtatt |
107 |
Q |
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| T |
6261183 |
ccaagaaaataattgtttttctttatgtaccactttgctatagaaaactgatgaagacaaaaag--gttctattttttgttgaattatggtaggtgtatt |
6261280 |
T |
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| Q |
108 |
tgcaaatataccactttgctttatattgtttatcagtcacgcatcttagaagagaggtgaggaactttaagtgtaactaag |
188 |
Q |
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| T |
6261281 |
tgcaaatataccactttgctatatattgtttatcagtcacacatcgtagaagagaggtgaggaactttaagtgtaactaag |
6261361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 204 - 331
Target Start/End: Original strand, 6262476 - 6262603
Alignment:
| Q |
204 |
aggtatacataaatttgtcttagttgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
303 |
Q |
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| T |
6262476 |
aggtatacataaatttgtcttaattgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
6262575 |
T |
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| Q |
304 |
tacatagttccttgaaattcttccattt |
331 |
Q |
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| T |
6262576 |
tacatagttccttgaaattcttccattt |
6262603 |
T |
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