View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_77 (Length: 350)
Name: NF8521A_low_77
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_77 |
 | |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 4242125 - 4242469
Alignment:
| Q |
5 |
caacaaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgctttt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4242125 |
caacaaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgctttt |
4242224 |
T |
|
| Q |
105 |
catccggttacctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4242225 |
catccggttacctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggta |
4242324 |
T |
|
| Q |
205 |
atatctattaaacaagatggtggatccgttgttacttactttgcaaaattacagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4242325 |
atatctattaaacaagatggtggatccgttgttacttactttgcaaaattacagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgt |
4242424 |
T |
|
| Q |
305 |
gcactaaagatgttgagacatataccaacaaactgaatgcacaac |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4242425 |
gcactaaagatgttgagacatataccaacaaactgaatgcgcaac |
4242469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 40088565 - 40088909
Alignment:
| Q |
5 |
caacaaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgctttt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40088565 |
caacaaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgctttt |
40088664 |
T |
|
| Q |
105 |
catccggttacctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40088665 |
catccggttacctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggta |
40088764 |
T |
|
| Q |
205 |
atatctattaaacaagatggtggatccgttgttacttactttgcaaaattacagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40088765 |
atatctattaaacaagatggtggatccgttgttacttactttgcaaaattacagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgt |
40088864 |
T |
|
| Q |
305 |
gcactaaagatgttgagacatataccaacaaactgaatgcacaac |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40088865 |
gcactaaagatgttgagacatataccaacaaactgaatgcgcaac |
40088909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 40457489 - 40457443
Alignment:
| Q |
276 |
tgatgcgattgaagattgtaccatggtgtgcactaaagatgttgaga |
322 |
Q |
| |
|
|||||| |||| | |||||||||||| |||||||||||||||||||| |
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|
| T |
40457489 |
tgatgccattgcaaattgtaccatggagtgcactaaagatgttgaga |
40457443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 8016987 - 8017331
Alignment:
| Q |
5 |
caacaaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgctttt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
8016987 |
caacgaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaagtcgctttt |
8017086 |
T |
|
| Q |
105 |
catccggttacctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggta |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8017087 |
catccggttacctacacccaagaagatctgggaatcggtcaaggagacttactttgtcaatcaagatgcatcaaaggcatatcagctttattgtgaggta |
8017186 |
T |
|
| Q |
205 |
atatctattaaacaagatggtggatccgttgttacttactttgcaaaattacagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8017187 |
atatctattaaacaagatggtggatccgttgttacttactttgcaaaattacagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgt |
8017286 |
T |
|
| Q |
305 |
gcactaaagatgttgagacatataccaacaaactgaatgcacaac |
349 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8017287 |
gcaataaagatgttgagacatataccaacaaactgaatgcgcaac |
8017331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 8192204 - 8191965
Alignment:
| Q |
5 |
caacaaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgctttt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
8192204 |
caacaaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgaaaaaagatgttaggtcgctttt |
8192105 |
T |
|
| Q |
105 |
catccggttacctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8192104 |
catccggttacctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggta |
8192005 |
T |
|
| Q |
205 |
atatctattaaacaagatggtggatccgttgttacttact |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8192004 |
atatctattaaacaagatggtggatccgttgttacttact |
8191965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 27518032 - 27517726
Alignment:
| Q |
16 |
tctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgcttttcatccggttac |
115 |
Q |
| |
|
||||| || |||||||| ||||||||||| || || |||||||||||||||||||||||| | ||||| ||||| ||| || || ||||| || || |
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|
| T |
27518032 |
tctgaggagtatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggattctatgaccaaagaaactagatccctcttcattcgcttgg |
27517933 |
T |
|
| Q |
116 |
ctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggtaatatctattaa |
215 |
Q |
| |
|
|||| | ||| | || |||||| | || |||||||| || || || | ||||||||||||| |||||||| | ||| |||||||||| |||| | | |
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|
| T |
27517932 |
ctacgacaaaggaaatttgggaaaccgtgaaggagacgtattcagtaaaccaagatgcatcaagagcatatcaattgtatcgtgaggtaatctctactca |
27517833 |
T |
|
| Q |
216 |
acaagatggtggatccgttgttacttactttgcaaaattacagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgtgcactaaagat |
315 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||| ||||| |||| | ||||| || |||||| ||| | ||||||||||||| ||| |||||||| |
|
|
| T |
27517832 |
acaaaatggtggatctgttattacttactttagtaaattgcagaggttatggcaagagtatgatgctattaatgattgtaccatggaatgccctaaagat |
27517733 |
T |
|
| Q |
316 |
gttgaga |
322 |
Q |
| |
|
||||||| |
|
|
| T |
27517732 |
gttgaga |
27517726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 495869 - 496089
Alignment:
| Q |
5 |
caacaaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgctttt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
495869 |
caacaaaaacctctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgataggtcgctttt |
495968 |
T |
|
| Q |
105 |
catccggttacctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
495969 |
catccggttacctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggta |
496068 |
T |
|
| Q |
205 |
atatctattaaacaagatggt |
225 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
496069 |
atatctattaaacaagatggt |
496089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 226 - 349
Target Start/End: Original strand, 12459145 - 12459268
Alignment:
| Q |
226 |
ggatccgttgttacttactttgcaaaattacagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgtgcactaaagatgttgagacat |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12459145 |
ggatccgttgttacttactttgcaaaattacagaaactgtggcaggaaattgatgagattgaagattgtaccatggtgtgcaataaagatgttgagacat |
12459244 |
T |
|
| Q |
326 |
ataccaacaaactgaatgcacaac |
349 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
12459245 |
ataccaacaaactgaatgcgcaac |
12459268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 56393794 - 56393721
Alignment:
| Q |
16 |
tctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaaga |
89 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
56393794 |
tctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggattctatgaccaaaga |
56393721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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