View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_79 (Length: 348)
Name: NF8521A_low_79
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 50958279 - 50957946
Alignment:
| Q |
6 |
agtgccatccaatgtgttgtactatgacatcaataggagttcaaaggatctagtatgaataagaacaaaacaacaagcttaaatttgcataaactattga |
105 |
Q |
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| T |
50958279 |
agtgccatccaatgtgttgtactatgacatcaataggagtttaaaggatctagtatgaataagaacaaaacaacaagcttaaatttgcataaactagtga |
50958180 |
T |
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| Q |
106 |
tcatagcatgtttatgtagattaaattaaaaatactgttgctggaaattttccctcccccttccattccttctacggttacggcgacgaccccctcttgc |
205 |
Q |
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| T |
50958179 |
tcatagcatgtttatgtagattatattaaaaatactgttgctggaaattttccctcccccttccattccttctacggttacggcgatgaccccctcttgc |
50958080 |
T |
|
| Q |
206 |
agccttcccaaattgatcacactttgtaaatatcccttggtccttcttattttggtttgttactgtttgcataccgcctctgttatgcctcgatttgttc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50958079 |
agccttcccaaattgatcacactttgtaaatatcccttggtccttcttattttggtttgttactgtttgcataccgcctctgttatgcctcgatttgttc |
50957980 |
T |
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| Q |
306 |
ttcattggtttgaggactgttgctagatattgtt |
339 |
Q |
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| T |
50957979 |
ttcattggtttgaggactgttgctagacattgtt |
50957946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 15856551 - 15856458
Alignment:
| Q |
8 |
tgccatccaatgtgttgtactatgacatcaataggagttcaaaggatctagtatgaataagaacaaaacaacaagcttaaatttgcataaacta |
101 |
Q |
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| T |
15856551 |
tgccatccaatgcattgtactatgacattaataggagtttgtaggatcttttatgaataagaacaaaacgacaagcttaaagttgcataaacta |
15856458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 339
Target Start/End: Complemental strand, 15856404 - 15856199
Alignment:
| Q |
125 |
attaaattaaaaatactgttgctggaaattttccctcccccttccattccttctacggttacggcgacgaccccctcttgcagccttcccaaattgatca |
224 |
Q |
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|||| |||||||| |||||||||||| ||| ||||||||||| ||||||||||||||| | | | |||||||| |||| ||||| ||||| |
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| T |
15856404 |
attatattaaaaagactgttgctggagttttcccctcccccttacattccttctacggtaaggac---------ctcttgcaacctttacaaatcgatca |
15856314 |
T |
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| Q |
225 |
cactttgtaaatatcccttggtccttcttattttggtttgttactgtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactg |
324 |
Q |
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| T |
15856313 |
aactttgtagaaatcactttccgcttcttatttcggtttgttactgtttgtacaccccttcttttatgcctcattttgttcttcactggcttgaggactg |
15856214 |
T |
|
| Q |
325 |
ttgctagatattgtt |
339 |
Q |
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|||||| | |||||| |
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| T |
15856213 |
ttgctacacattgtt |
15856199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 50948792 - 50948716
Alignment:
| Q |
263 |
tgttactgtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactgttgctagatattgtt |
339 |
Q |
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|||||||||||||| || | |||| ||||| || ||||| ||||||||| |||||||||||||| ||| |||||| |
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| T |
50948792 |
tgttactgtttgcacgccccatctgctatgcttcattttgtacttcattggcttgaggactgttgccagacattgtt |
50948716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 339
Target Start/End: Complemental strand, 33632095 - 33631994
Alignment:
| Q |
235 |
atatcccttggtccttcttattttggtttgttactgtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactgttgctagata |
334 |
Q |
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|||||||||| ||||| |||| |||||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||| |||||||||||||| ||| | |
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| T |
33632095 |
atatcccttgctccttgttat---ggtttgttactgtttgcacaccccctctactatgcctcgttttgtacttcattggcttgaggactgttgccagaca |
33631999 |
T |
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| Q |
335 |
ttgtt |
339 |
Q |
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||||| |
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| T |
33631998 |
ttgtt |
33631994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 8155381 - 8155334
Alignment:
| Q |
196 |
cccctcttgcagccttcccaaattgatcacactttgtaaatatccctt |
243 |
Q |
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| T |
8155381 |
cccctcttgcagccttcacaaatcgatcactctttgtaaatatccctt |
8155334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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