View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_8 (Length: 531)
Name: NF8521A_low_8
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 30 - 510
Target Start/End: Original strand, 39393424 - 39393904
Alignment:
| Q |
30 |
caattttaaaatcaatgttatttttatctttatacctaaatatttttctgtgactaagatatttgattagtacatgcatacctgtagggcgagggtacac |
129 |
Q |
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| T |
39393424 |
caattttaaaatcaatgttatttttatatttatacctaaatatttttctgtgactaagatatttgattagtacatgcatacctgtagggcgagggtacac |
39393523 |
T |
|
| Q |
130 |
ttctgggtcaagaggtgtccttcgattggaagcacggtagctaagaaaaagagcatgtggcgttatagcattagcttctttgggctccaaaacaatacta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39393524 |
ttctgggtcaagaggtgtccttcgattggaagcacggtagctaagaaaaagagcatgttgcgttatagcattagcttctttgggctccaaaacaatacta |
39393623 |
T |
|
| Q |
230 |
tgggccttaagcccagaaactctaaaccttgaaaacaacaactccaacttattagaccaaggacccaatgctaaaaccaccgcatccgcatccacaacac |
329 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39393624 |
tgggccttaagcccagaaactctaaaccttgaagacaacaactccaacttattagaccaaggacccaatgctaaaaccaccgcatccgcatccacaacac |
39393723 |
T |
|
| Q |
330 |
ccccaccttctagaatcaccgattcaacttttcctccttccaccaccaacctctccaatttcccaatcacaactttcacaccgtacttctccacagcgtt |
429 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39393724 |
ccccactttctagaatcactgattcaacttttcctccttccaccaccaacctctccaatttcccaatcacgactttcacaccgtacttctccacagcgtt |
39393823 |
T |
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| Q |
430 |
ctcaatcagtgtccgcgtaaacagttgcggatgcacctgcgcagtagtttcgtgtgttccaattgttttaggcccatgggt |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39393824 |
ctcaatcagtgtccgcgtaaacagttgcggatgcacctgcgcagtagtttcgtgtgttccaattgttttaggcccatgggt |
39393904 |
T |
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