View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_85 (Length: 338)
Name: NF8521A_low_85
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 73 - 323
Target Start/End: Complemental strand, 44535335 - 44535085
Alignment:
| Q |
73 |
tgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcac |
172 |
Q |
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| T |
44535335 |
tgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcac |
44535236 |
T |
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| Q |
173 |
tggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaaggagtcctcaactttctttacctcattatgatcatatgataatgaatt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44535235 |
tggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaaggagtcctcaactttctttacctcattatgatcatatgataatgaagt |
44535136 |
T |
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| Q |
273 |
tgatgagtttctcatcttctccctcatgttggtagtaaccttttcctctat |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535135 |
tgatgagtttctcatcttctccctcatgttggtagtaaccttttcctctat |
44535085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 2579856 - 2579963
Alignment:
| Q |
82 |
ccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcactggcattga |
181 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||| |||| || || || | ||| || ||||| ||||||||||||||||| ||||||| |
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| T |
2579856 |
cccctagcaagcattttctcataattctcaatagattgaagcctctgaagcataagctgctgcctaaagttcttaatgaaggcatcagcactagcattga |
2579955 |
T |
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| Q |
182 |
tgtcttct |
189 |
Q |
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| T |
2579956 |
tatcttct |
2579963 |
T |
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