View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_87 (Length: 333)
Name: NF8521A_low_87
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_87 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 10597876 - 10597666
Alignment:
| Q |
32 |
tctttcaaagcagtcgtatcaagtttatcaaccacaataggaatgtcactgacctctgattttgatttgcattctgaatccgttttgtcagaaaaattac |
131 |
Q |
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| T |
10597876 |
tctttcaaagcagtggtatcaagtttatcaaccacaataggaatgtcgatgacctctgactttgatttgcattccaaatccgttttgtcaacaagatcac |
10597777 |
T |
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| Q |
132 |
ttgtggagtccaatgcatcagcagcaattacaggactataatcttcgttgattaatccatttggtagcattgtagtctttgctctctcacttgatgcaga |
231 |
Q |
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| T |
10597776 |
ttgtggaatccgatgcatcagcagccattacaggactgctatcctcattgattaatccatttggtagcattgtggtctttgttctctcacttaatgcaga |
10597677 |
T |
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| Q |
232 |
atcaacatgcg |
242 |
Q |
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| T |
10597676 |
atcaacatgcg |
10597666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 208 - 333
Target Start/End: Complemental strand, 10597664 - 10597539
Alignment:
| Q |
208 |
ctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttccaccatcatcatccttcatacagaaatattccttgggacttccattacca |
307 |
Q |
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| T |
10597664 |
ctttgttctctcacttgatgcagaatcaacatgcgaccgagattcacttctaccatcatcatccttcatacagaactgttccttgggacttccatcacta |
10597565 |
T |
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| Q |
308 |
gtaccttcagatgaatctttttctga |
333 |
Q |
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| T |
10597564 |
gtaccttcagatgaatctttttctga |
10597539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 158 - 333
Target Start/End: Complemental strand, 53388425 - 53388250
Alignment:
| Q |
158 |
attacaggactataatcttcgttgattaatccatttggtagcattgtagtctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttc |
257 |
Q |
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| T |
53388425 |
attacaggactacaatcctcattgattaatccatctggtagcattgtaggctttgttctctcacttgacgtagaatcaacatgcgaccgagattcacttc |
53388326 |
T |
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| Q |
258 |
caccatcatcatccttcatacagaaatattccttgggacttccattaccagtaccttcagatgaatctttttctga |
333 |
Q |
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| T |
53388325 |
caccgtcatcatccttcatacataattgttccttgggacttccctcactaataccttcagatgaatctttttctga |
53388250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 53388507 - 53388427
Alignment:
| Q |
30 |
attctttcaaagcagtcgtatcaagtttatcaaccacaataggaatgtcactgacctctgattttgatttgcattctgaat |
110 |
Q |
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| T |
53388507 |
attctttcaaagcagtcgtatcaaatttatcaaccacaataggaatgtcgctgacctctgattttgatttgcattctgaat |
53388427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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