View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_96 (Length: 326)
Name: NF8521A_low_96
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 321
Target Start/End: Original strand, 6313571 - 6313889
Alignment:
| Q |
4 |
caatgcgtatggttatagtacaagttagctaaacttaaccaacaagaataatcatgacagaagtgaaagaaaatgataaagnnnnnnnn-gtaaccaaaa |
102 |
Q |
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| T |
6313571 |
caatgcgtatggttatagtacaagttagctaaacttaaccaacaagaataatcatgacagaagtgaaagaaaatgataaagaaaaaaaaagtaacccaaa |
6313670 |
T |
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| Q |
103 |
aaccttgtccttttctgcatggacggcgcgtacatacacaacaaaaacagcgcgcgtaagtccaaaaagcttcaccgcctctaatccttctaacttcttc |
202 |
Q |
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| T |
6313671 |
aaccttgtccttttctgcatggacggcgcgtacatccacaacaaaaacagcgcgcgtaagtccaaaaagcttcaccgcctctaatccttctaatttcttc |
6313770 |
T |
|
| Q |
203 |
tccctccaccttttttctaaagaattcaaaattaaattacacacacaccaaaaatacatcacctataaaaaagtgtatactctatgacnnnnnnnntccc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6313771 |
tccctccaccttttttctaaagaattcaaaattaaattacacacacaccaaaaatacatcacctataaaaaagtgtatactctatgacaaaaaaaatccc |
6313870 |
T |
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| Q |
303 |
tcaaattcctcttctttgt |
321 |
Q |
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||||||||||||||||||| |
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| T |
6313871 |
tcaaattcctcttctttgt |
6313889 |
T |
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