View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_high_13 (Length: 336)

Name: NF8521_high_13
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_high_13
NF8521_high_13
[»] chr7 (14 HSPs)
chr7 (221-332)||(3651452-3651563)
chr7 (42-162)||(3703699-3703823)
chr7 (42-165)||(3679616-3679738)
chr7 (232-290)||(3702975-3703033)
chr7 (232-287)||(3705909-3705964)
chr7 (232-290)||(3694967-3695024)
chr7 (164-221)||(3653830-3653887)
chr7 (232-290)||(3685518-3685578)
chr7 (232-289)||(3693200-3693257)
chr7 (166-217)||(3651121-3651172)
chr7 (174-221)||(3675306-3675353)
chr7 (166-217)||(3706365-3706416)
chr7 (292-333)||(3700515-3700556)
chr7 (42-98)||(3675873-3675933)


Alignment Details
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 3651452 - 3651563
Alignment:
Q  221 cttctgctcgaaataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcattagatgtcttccaaactggggatcacctag 320  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651452 cttcggctcgaaataagcagaatttgggacattattaaaagttacataaactgttgctacaattaatcattagatgtcttccaaactggggatcacctag 3651551  T
Q  321 ggttgaaagatg 332  Q
    ||||||||||||    
T  3651552 ggttgaaagatg 3651563  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 3703823 - 3703699
Alignment:
Q  42 ttcattctgctatctgttgtag-catgctttttggcataaagcttatatgaaaattatcgtttacttaaattatctccttcaatccatttg---ttggct 137  Q
    |||||||||||||||||| ||  |||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||| |||   ||||||    
T  3703823 ttcattctgctatctgttataaacatgatttttggcataaagcttataacaaaattaccgtttacttaaattatctccttcaatccaattgttattggct 3703724  T
Q  138 caagtttaatatgattcgactattg 162  Q
    |||||||||||||||||||||||||    
T  3703723 caagtttaatatgattcgactattg 3703699  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 3679738 - 3679616
Alignment:
Q  42 ttcattctgctatctgttgtagcatgctttttggcataaagcttatatgaaaattatcgtttacttaaattatctccttcaatccatttgttggctcaag 141  Q
    |||||||||||||||||| || |||| || ||||||||||||| |||  |||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  3679738 ttcattctgctatctgttataacatgattcttggcataaagct-ataacaaaattactgtttacttaaattatctccttcaatccaattgttggctcaag 3679640  T
Q  142 tttaatatgattcgactattgcag 165  Q
    |||||||||||| ||||| |||||    
T  3679639 tttaatatgatttgactagtgcag 3679616  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 3703033 - 3702975
Alignment:
Q  232 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcat 290  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  3703033 aataaacagaatttgagacattattaaaagttacataaactgttgccacaattaatcat 3702975  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 3705964 - 3705909
Alignment:
Q  232 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaat 287  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  3705964 aataaacagaagttgagacattattaaaagttacataaactgttgctacaattaat 3705909  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 3695024 - 3694967
Alignment:
Q  232 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcat 290  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  3695024 aataaacaga-tttgagacattattaaaagttacataaactgttgctacaattaatcat 3694967  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 3653830 - 3653887
Alignment:
Q  164 aggagtgtgttatagttgaaggaggcttgtttttgtaacttagactatgtactattac 221  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  3653830 aggagtgtgttatagttgatggaagcttgtttttgtaacttagaccatgtactattac 3653887  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 3685578 - 3685518
Alignment:
Q  232 aataaacagaatttggga--cattattaaaagttacataaactgttgctacaattaatcat 290  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  3685578 aataaacagaatttgagagacattattaaaagttacataaactgttgctacaattaatcat 3685518  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 3693257 - 3693200
Alignment:
Q  232 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatca 289  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  3693257 aataaacataatttaagacattattaaaagttacataaactgttgctacaattaatca 3693200  T

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Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 3651121 - 3651172
Alignment:
Q  166 gagtgtgttatagttgaaggaggcttgtttttgtaacttagactatgtacta 217  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3651121 gagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtacta 3651172  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 3675353 - 3675306
Alignment:
Q  174 tatagttgaaggaggcttgtttttgtaacttagactatgtactattac 221  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  3675353 tatagttgaaggaggcttgtttttctaacttagactatgtactattac 3675306  T

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Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 3706416 - 3706365
Alignment:
Q  166 gagtgtgttatagttgaaggaggcttgtttttgtaacttagactatgtacta 217  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3706416 gagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtacta 3706365  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 3700556 - 3700515
Alignment:
Q  292 agatgtcttccaaactggggatcacctagggttgaaagatga 333  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  3700556 agatgtcttccaaactggggatcacctagggttaaaagatga 3700515  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 3675933 - 3675873
Alignment:
Q  42 ttcattctgctatctgttgtagcat----gctttttggcataaagcttatatgaaaattat 98  Q
    |||| ||||||||||||||||||||    ||||||||||||||||||||||| ||||||||    
T  3675933 ttcactctgctatctgttgtagcatacatgctttttggcataaagcttatatcaaaattat 3675873  T

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