View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_high_16 (Length: 320)
Name: NF8521_high_16
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 2396347 - 2396060
Alignment:
| Q |
18 |
aaggtattcatacatgacatgaaagattcatgttccctaaaagaacatgtattgtgtaatttcatcttgcacaatggtgttgatgatatccaactattat |
117 |
Q |
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| T |
2396347 |
aaggtattcatacatgacatgaaaggttcatgttccctaaaaaaacatgtgctgtgtaatttcatcttgcacaatggtgttgatgatatccaactattat |
2396248 |
T |
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| Q |
118 |
ggaattccattgttgtgttatctattagaattggaattttcgcttatatctaaattcaatgggatcttttgaacaatgcatattttgatttaaagctgta |
217 |
Q |
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| T |
2396247 |
ggaattccattgttgtgttatctattataattgggattttcacttatatctaaatttaatggggtcttttgaacaatgcatattttgatttaaagctgta |
2396148 |
T |
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| Q |
218 |
aaattgaaattagaacggcagttaactgccgtttggggtaaaatgataatttaagggtgcataagagcaaactagtatgtttaaagag |
305 |
Q |
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| T |
2396147 |
aaattgaaattaaaacggcagttaactgccgtttggggtaaaatgataatttaagggtgcataagagcaaactagtatgtttaaagag |
2396060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 26576643 - 26576541
Alignment:
| Q |
63 |
catgtattgtgtaatttcatcttgcacaatggtgttgatgatatccaactattatggaattccattgttgtgttatctattagaattggaattttcgctt |
162 |
Q |
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|||||| ||||||||| || |||||||||||||||||||||||| |||||||| || |||||| |||||| |||||||||| ||||||| ||||| |||| |
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| T |
26576643 |
catgtactgtgtaattgcaccttgcacaatggtgttgatgatat-caactattctgaaattccgttgttgagttatctattggaattgggatttt-gctt |
26576546 |
T |
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| Q |
163 |
atatc |
167 |
Q |
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| T |
26576545 |
atatc |
26576541 |
T |
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