View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_high_20 (Length: 260)

Name: NF8521_high_20
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_high_20
NF8521_high_20
[»] chr7 (14 HSPs)
chr7 (1-244)||(4653348-4653591)
chr7 (28-244)||(4846039-4846255)
chr7 (28-244)||(4712099-4712315)
chr7 (28-244)||(4666790-4667009)
chr7 (25-244)||(4697214-4697433)
chr7 (39-123)||(4672542-4672626)
chr7 (28-123)||(4630782-4630877)
chr7 (28-123)||(4643526-4643621)
chr7 (25-244)||(4783859-4784078)
chr7 (43-121)||(4863792-4863870)
chr7 (25-244)||(4816288-4816507)
chr7 (175-244)||(4636859-4636928)
chr7 (75-131)||(4662893-4662949)
chr7 (28-84)||(4647388-4647444)
[»] chr4 (1 HSPs)
chr4 (25-233)||(18925777-18925985)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4653348 - 4653591
Alignment:
Q  1 tattttgtgtggttagttgctctctgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4653348 tattttgtgtggttagttgctctctgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacaacataatcct 4653447  T
Q  101 tatgaacaggaaccaaacgagcattgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcaccttt 200  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4653448 tatgaacaggaatcaaacgagcattgctccatgaaatcacatcagcatttggttcagccaagaaatcatgtataaatatctggaaaactctatcaccttt 4653547  T
Q  201 attcttgatacgccaatcaaattcacaaaaatgtaacctgacca 244  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  4653548 atccttgatacgccaatcaaattcacaaaaatgtaacctgacca 4653591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 4846255 - 4846039
Alignment:
Q  28 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcattgc 127  Q
    |||||||||| |||||||||||||||||||| || |||||| | || |||||  ||  ||||||||||||||||||||||||||| ||    | ||   |    
T  4846255 agcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatgaacaggaatcatgttaccaccac 4846156  T
Q  128 tccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattcaca 227  Q
    ||||  ||||||| ||||||| | |||||||||| | ||||| |||||||||||| |||||||||||||||||||||||| || ||  |||||| |||||    
T  4846155 tccaaaaaatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaaactcaca 4846056  T
Q  228 aaaatgtaacctgacca 244  Q
    |||||||||||| ||||    
T  4846055 aaaatgtaaccttacca 4846039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 4712315 - 4712099
Alignment:
Q  28 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcattgc 127  Q
    ||||| |||| ||| |||||||||||||||| || |||||| | || ||||| |||  ||||||||||||||||||||||||||| ||    | ||   |    
T  4712315 agcttaattgaaaggttaactctttcaatttcagagcttccattttgagagtacattttcacagcataatccttatgaacaggaatcatgttaccaccac 4712216  T
Q  128 tccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattcaca 227  Q
    ||||  ||||||| ||||| | | |||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||| ||  |||||| |||||    
T  4712215 tccagtaaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcaca 4712116  T
Q  228 aaaatgtaacctgacca 244  Q
    |||||||||||| ||||    
T  4712115 aaaatgtaaccttacca 4712099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 4666790 - 4667009
Alignment:
Q  28 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat--- 124  Q
    ||||| |||| ||||||||||||||||||||||  ||| ||| ||| ||| | ||||||||  ||||||||||||||||||||||||| |||| ||        
T  4666790 agcttaattgaaagattaactctttcaatttgacggctccctccttgagaatccatagtcaaggcataatccttatgaacaggaaccatacgaacaccac 4666889  T
Q  125 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 224  Q
    | |||||  ||| |||||||||  ||||||||||||  | |||||  ||||| ||||| |||||||||||||||  |||||||||| |||||||||| ||    
T  4666890 tactccaataaagcacgtcagcccttggttcagccataatatcatctataaaaatctgaaaaactctatcacctggattcttgatatgccaatcaaactc 4666989  T
Q  225 acaaaaatgtaacctgacca 244  Q
    ||||||||| ||||| ||||    
T  4666990 acaaaaatgcaaccttacca 4667009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 4697433 - 4697214
Alignment:
Q  25 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat 124  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||| | ||| |     
T  4697433 tgtagcttgattgaaagattaagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatctttatgaacaggaaccataggagtag 4697334  T
Q  125 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 224  Q
    | ||||| |||||||| ||||| |||   || |||||   || |   || ||||| || || |||||||||||| |||| |||||| ||  |||||| ||    
T  4697333 tactccaagaaatcacatcagcgtttatctccgccaaagtattagctatgaatatttgaaagactctatcacctatatttttgatatgctgatcaaactc 4697234  T
Q  225 acaaaaatgtaacctgacca 244  Q
    ||||||||| ||||| ||||    
T  4697233 acaaaaatgcaaccttacca 4697214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 4672542 - 4672626
Alignment:
Q  39 aagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagca 123  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  4672542 aagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagca 4672626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 4630782 - 4630877
Alignment:
Q  28 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagca 123  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||  |||| ||||||||||||||  |||||||| |||||||    
T  4630782 agcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacataagcacaacataatccttatgagtaggaaccatacgagca 4630877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 4643526 - 4643621
Alignment:
Q  28 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagca 123  Q
    |||||||||| ||||||| ||||||||| ||||| ||||||||||| | ||| ||||| ||  |||||||||||||||||||||||||||||||||    
T  4643526 agcttgattgaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagca 4643621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 4784078 - 4783859
Alignment:
Q  25 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat 124  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||  ||| |||   ||||||||| ||||||||||||||||||||||||||| |||||     
T  4784078 tgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaaccaaaggagcac 4783979  T
Q  125 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 224  Q
      |||||    ||||| ||||||    ||||||||||   |||||  || || ||||| |||| ||||||||| |  |  |||||| |||||||||| ||    
T  4783978 cactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactc 4783879  T
Q  225 acaaaaatgtaacctgacca 244  Q
    ||||||||||||||| ||||    
T  4783878 acaaaaatgtaaccttacca 4783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 4863792 - 4863870
Alignment:
Q  43 ttaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgag 121  Q
    ||||||||||||||||||| |||||||||||||||||  |||| ||||| ||||||||||||||||||||||| |||||    
T  4863792 ttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgag 4863870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 4816507 - 4816288
Alignment:
Q  25 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat 124  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||  | | |||   ||||||||| ||||||||||||||||||||||| ||| |||||     
T  4816507 tgtagcttgatcgaaagattaactttttcaatttgagagcttccgccatgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcac 4816408  T
Q  125 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 224  Q
      |||||  | ||||| ||||||    ||||||||||   |||||  || || ||||| |||| ||||||||| |  |  |||||| |||||||||| ||    
T  4816407 cactccaccatatcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactc 4816308  T
Q  225 acaaaaatgtaacctgacca 244  Q
    ||||||||||||||| ||||    
T  4816307 acaaaaatgtaaccttacca 4816288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 4636859 - 4636928
Alignment:
Q  175 aatatctggaaaactctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgacca 244  Q
    |||||||| || ||||||||||||||||  |||||| |||||||||| ||||||||||||||||| ||||    
T  4636859 aatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaaaatgtaaccttacca 4636928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 4662893 - 4662949
Alignment:
Q  75 agagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcattgctcca 131  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||| |||| |||||    
T  4662893 agagtacatagtcacaccataatccttatgaacaggaaccatacgaccattactcca 4662949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 4647388 - 4647444
Alignment:
Q  28 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcata 84  Q
    |||||||||| |||||||||||||||||||||| | |||||| ||| ||||| ||||    
T  4647388 agcttgattgaaagattaactctttcaatttgattccttcctccttgagagtacata 4647444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 18925985 - 18925777
Alignment:
Q  25 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat 124  Q
    |||||||| |||| |||||||||||||| |||||| | ||||||||||  ||||| |||||||||| |||||||||||||||||||||||| |||||||     
T  18925985 tgtagctttattgaaagattaactcttttaatttgcgagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaaccatacgagcac 18925886  T
Q  125 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 224  Q
      |||||   |||||| ||||||||| ||||||||||   |||||  ||||| ||||| |||||||||||||||| |||||| ||| |||||||||| ||    
T  18925885 cactccaatgaatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactc 18925786  T
Q  225 acaaaaatg 233  Q
     ||||||||    
T  18925785 gcaaaaatg 18925777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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