View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_high_26 (Length: 237)

Name: NF8521_high_26
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_high_26
NF8521_high_26
[»] chr3 (2 HSPs)
chr3 (135-220)||(8152460-8152543)
chr3 (16-97)||(8152342-8152422)
[»] chr4 (1 HSPs)
chr4 (30-71)||(43948772-43948813)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 8152460 - 8152543
Alignment:
Q  135 ggtcacgacttcaacatatatagatcattgaaactgacaagagtttatagctatatagagcgaatcatatgttatgacactttctt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  8152460 ggtcacgacttcaacatatatagatcattgaaactgacaagagattatagctatataga--gaatcatatgttatgacactttctt 8152543  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 8152342 - 8152422
Alignment:
Q  16 atgaacatttaatatgttcttaacacctctcctcttttgagtaataaattacttaacattttttattggaagatgttagaat 97  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||||    
T  8152342 atgaacatttaatatgttcttaacacctcttctcttttgagtaacaaattactt-acattttttattggaagatattagaat 8152422  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 43948813 - 43948772
Alignment:
Q  30 tgttcttaacacctctcctcttttgagtaataaattacttaa 71  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  43948813 tgttcttaacatctctcctcttttgagtaataaatcacttaa 43948772  T

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