View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_high_30 (Length: 207)
Name: NF8521_high_30
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 18219163 - 18219339
Alignment:
| Q |
1 |
accacttttcagcctttctatctttgctgctttgtcctctgctgctctgcttcctactaccatttgtgtgtcttctgattttgnnnnnnngacattatta |
100 |
Q |
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| T |
18219163 |
accacttttcagcctttctatctttgctgctttgtcctctgctgctctgcttcctactaccatttgtgtgtctgctgattttgtttttttgacattatta |
18219262 |
T |
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| Q |
101 |
cctttctcttcctcccttgtctcttgtccaatgctttctgtcaatgatgttggtcctagcaataacgctggtggtgttaatgattctgacat |
192 |
Q |
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| T |
18219263 |
cctttctcttc---------------tccaatgttttctgtcaatgatgttggtccaagcaataacactggtggtgttaatgattctgacat |
18219339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 43011096 - 43011226
Alignment:
| Q |
45 |
ctctgcttcctactaccatttgtgtgtcttctgattttgnnnnnnngacattattacctttctcttcctcccttgtctcttgtccaatgctttctgtcaa |
144 |
Q |
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| T |
43011096 |
ctctgcttcctactaccatttgtgtgtctgctgattttgttttgttcacgttagtacctttctcttcctcccttgtctcatgtccaatgttttctgtcaa |
43011195 |
T |
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| Q |
145 |
tgatgttggtcctagcaataacgctggtggt |
175 |
Q |
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| T |
43011196 |
tgatgttggtccaagcaatgacgctggtggt |
43011226 |
T |
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