View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_high_4 (Length: 450)
Name: NF8521_high_4
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 74 - 441
Target Start/End: Original strand, 9396305 - 9396669
Alignment:
| Q |
74 |
ccagatatgtatttccactttattcatcctataatacatttccaaaattttccca-aacatttatctttagtttttcgaaaggtatgccaaaaaa-ctcc |
171 |
Q |
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| T |
9396305 |
ccaggtatgtatttccactttattcatcctataatacatttccaaaattttcccagaacattcatctttagtttttcgaaaggtatgccaaaaaaacttc |
9396404 |
T |
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| Q |
172 |
acacatcctttccgaaaaatatataataatcttcctgcttgtgaaatcatcaagtcatgtgtgctaaagcagttacacgagcactctcaatattgtgatt |
271 |
Q |
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| T |
9396405 |
acacatccttttcgaaaaatatataataatcttcctgcttgtgaaatcatcaagtc--gtgtgctaaagcacttacacgagcactctcaatattgtgatt |
9396502 |
T |
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| Q |
272 |
acagaaaaagtgatagagtagtccatgatgtgtaacttattcattaaattgtttctcttctgtctcacacgtcgactatagcagacaaaacaataatcac |
371 |
Q |
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||| |||||||||| |||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
9396503 |
acaaaaaaagtgattgagtagtccatgatgtttaccttattcattaaattgtttctcttc--tctcacacgtcgactatagcagac-aaacaataatcac |
9396599 |
T |
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| Q |
372 |
aaaacttctttaatttatgaaaacaattctcaaacctacaattatgaagtcgatagtacacagtataatc |
441 |
Q |
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| T |
9396600 |
aaaacttctttaatttatgaaaacaattctcaaacctacaattatgaagtcgataatacatcgtataatc |
9396669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 9391113 - 9391172
Alignment:
| Q |
17 |
atttttcaccctcaattttaacattttccattcaagttcaccccacgtgatatttttcca |
76 |
Q |
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| T |
9391113 |
atttttcaccctcaattttaacattttccattcaagttcaccccacgtgatatttttcca |
9391172 |
T |
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