View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_high_6 (Length: 419)
Name: NF8521_high_6
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_high_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 13379856 - 13379438
Alignment:
| Q |
1 |
gttaaaagatttaaagacagggtgtgaattgtcctgcttgagaaaacataagagattttcattgtagagattcatcctgaatgatgatgtgtgatgtaaa |
100 |
Q |
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| T |
13379856 |
gttaaaagatttaaagacagggtg--aattgtcctgcttgagaaaacataagagattttctttgtagagattcatcctgaatgatgatgtgtgatgtaaa |
13379759 |
T |
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| Q |
101 |
atcctgaatannnnnnnnn--atggataatgataaagatcgagaagcattgttatagcgaaaatcacgattgacatatgatttattttaattggctcctt |
198 |
Q |
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| T |
13379758 |
atcctgaatttttttttttttatggataatgataaagatcgagaagcattgttatagcgaaaatcacgattgacatatgatttattttaattggctcctt |
13379659 |
T |
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| Q |
199 |
gtatggtaagagggtgctgactagtggtaatgcaggtgctatttctgtcgtaatgctaattaacacgagcacatcactcgcgagaaataacactgctctt |
298 |
Q |
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| T |
13379658 |
gtatggtaagagggtgctgactagtggtaatgcaggtgctatttgtggcataatgctaattaacacgagcacatcactcgcgagaaataacactgctctt |
13379559 |
T |
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| Q |
299 |
tttcattccttttcagggaaacaggggagaaggatgtggcattcaaagtactattctgcggtatatgtcactcggacctccatatggcgaagaatgagtg |
398 |
Q |
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| T |
13379558 |
tttcattccttttcagggaaacaggggagaaggatgtggcattcaaagtactattttgcggtatatgtcactcggacctccatatggcgaagaatgagtg |
13379459 |
T |
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| Q |
399 |
gggcagtactacttacccagt |
419 |
Q |
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| T |
13379458 |
gggcagtactacttacccagt |
13379438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 13373738 - 13373629
Alignment:
| Q |
307 |
cttttcagggaaacaggggagaaggatgtggcattcaaagtactattctgcggtatatgtcactcggacctccatatggcgaagaatgagtggggcagta |
406 |
Q |
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| T |
13373738 |
cttttcagggaaacgggagaaaaagatgtggcattcaaagtactatattgtggtatatgtcattcggatctccacatgctgaagaacgagtggggtagtt |
13373639 |
T |
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| Q |
407 |
ctacttaccc |
416 |
Q |
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||| |||||| |
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| T |
13373638 |
ctatttaccc |
13373629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 13454427 - 13454385
Alignment:
| Q |
361 |
atatgtcactcggacctccatatggcgaagaatgagtggggca |
403 |
Q |
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| T |
13454427 |
atatgtcactcggaccttcataaggcgaagaatgaatggggca |
13454385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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