View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_1 (Length: 1100)
Name: NF8521_low_1
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 738; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 74 - 961
Target Start/End: Complemental strand, 22159769 - 22158885
Alignment:
| Q |
74 |
actccaaatcaaagcaacttgggtacaaatatatgcttcatcaat----gtgtcataagttgtgtgattgtcacatgaacagatattttccttaaagtcg |
169 |
Q |
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|||||| ||||| ||||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22159769 |
actccagatcaatgcaacttcggtccaaatatatgcttcatcaatcaatgtgtcacaagttgtgtgattgtcacatgaacagatattttccttaaagtca |
22159670 |
T |
|
| Q |
170 |
taagagagggaaaatgagctagtaagagccgttcttgctaagaaattcatagaagaacatgcaaacaatgttaatgggatttgaattgcagtgcacacat |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22159669 |
taagagagggaaaatgagctagtaagagccgttcttgctaagaaattcatagaacagcatgcaaacaatgttaatgggatttgaattgcagtgcacacat |
22159570 |
T |
|
| Q |
270 |
tcgatgtgtgatgcattaatttaatcttgaccgtccaacctcaaatcaatggtgatgatgatttgtaaatgtataatgtgagctgactgatttcaaatca |
369 |
Q |
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| T |
22159569 |
tcgatgtgtgatgcattaatttaatcttgaccgtccaacctcaaatcaatggtgatgatgatttgtaaatgtataatgtgagctgactgatttcaaatca |
22159470 |
T |
|
| Q |
370 |
atgattgagatcacttaatgtgcctaaataagtttttatatgata-agtgttaaattaagnnnnnnnacctaaacacactccaaaatcaaatcaaagtgg |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
22159469 |
atgattgagatcacttaatgtgcctaaataagtttttatatgatatagtgttaaaataagtttttttacctaaacacactccaaaatcaaatcaaagtgg |
22159370 |
T |
|
| Q |
469 |
taaagttgagaataagtgggaaacaaaataggttgaaaatgaaagcataccatattgagaagatgaagttgttggttaaaggttttgaaaccaccattga |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
22159369 |
taaagttgagaataagtgggaaacaaaataggttgaaaatgaaagcataccatattgagaagatggagttgttggttaatggttctgaaaccaccattga |
22159270 |
T |
|
| Q |
569 |
cactgatgaagtagatatcattatcttgttgagttgcatttgtgttgagaaatgtctgaggctggcctaagttgagagcaatgtagagagcacaacagag |
668 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22159269 |
cactgatgaagtagatatcattatcttgttgagttgcatttgtgttgagcaatgtctgaggttggcctaagttgagagcaatgtagagagcacaacagag |
22159170 |
T |
|
| Q |
669 |
acaaagttgaatgagaagagtacatgcacatgatgttttctccatttagaccactttccaagtaacataggaggaagcaagataagtgaacacgattcaa |
768 |
Q |
| |
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| T |
22159169 |
acaaagttgaatgagaagagtacatgcacatgatgttttctccatttagaccactttcca--------aggaggaagcaagataagtgaacacgattcaa |
22159078 |
T |
|
| Q |
769 |
ttttatgtgagattagatctaaaatgtaagcatagtaatgtttgagataataatgaattaattatagtccacgttggacacgtgattggtgacgttgtaa |
868 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
22159077 |
tttgatgtgagattagatctcaaatgtaagcatagtaatgtttgagataataatgaattaattatagtccacgttggacatgtgattggtaacgttgtaa |
22158978 |
T |
|
| Q |
869 |
tggtccctttttgttctcttcctcatgtttcttatcacttatatatttggtaatattacaagtttcttcatttgcattgtaagtgtctatctt |
961 |
Q |
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| T |
22158977 |
tggtccctttttgttctcttcctcatgtttcttatcacttatatatttggtaatattacaagtttctacatttgcattgtaaatgtctatctt |
22158885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 976 - 1085
Target Start/End: Complemental strand, 22158808 - 22158699
Alignment:
| Q |
976 |
taaattataatggaaatctaagattggaagacttgaaaatggtcaaaaattatgcatcaaacttcatttattatttttgtaattcctaatctaactacat |
1075 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158808 |
taaattataatggaaatctaagattggaagacttgaaaatggtcaaaaattatgcatcaaacttcatttattatttttgtaattcctaatctaactacat |
22158709 |
T |
|
| Q |
1076 |
gtgatttgat |
1085 |
Q |
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|||||||||| |
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| T |
22158708 |
gtgatttgat |
22158699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 22159960 - 22159905
Alignment:
| Q |
19 |
catgaacaccggaaagaaagaaaaacagtgagcaaagtctgcaaaataagaacata |
74 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22159960 |
catgaacaccggaaagaaagaaatacagtgagcaaagtctgcaaaataagaacata |
22159905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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