View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_11 (Length: 419)
Name: NF8521_low_11
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Complemental strand, 37008207 - 37007800
Alignment:
| Q |
8 |
tggacatcaagggattatatatgctggaacaaattgctttcatagaagaaaagttatgtatggtctttctcctcctaatgaaattcaaaatgcaaagaag |
107 |
Q |
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| T |
37008207 |
tggacttcaagggattatatatgctggaacaaattgctttcatagaagaaaagttatgtatggtctttctcctcctaatgaaattcaaaatgcaaagaag |
37008108 |
T |
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| Q |
108 |
ggtcaaggtttcatcaatggtatattaagatatacttacaatannnnnnnn--cattatttcaaaatcaatattttattgaagagaaactaatgctatta |
205 |
Q |
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| T |
37008107 |
ggtcaaggtttcaccaatggtatattaagatatacttacaatttttttttcttcattatttcaaaatcaatattttgttgaagagaaactaatgctatta |
37008008 |
T |
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| Q |
206 |
taaaatagcagtactaattcctgttagccaattagcctaagaaatataaacttttggtatcttgtgtaggaacgtttttatcagaaaaagaaacagtgca |
305 |
Q |
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| T |
37008007 |
taaaatagcaggactaattcctgttagccaattagcctaagaaatataaacttttggtatcttgtgtaggaacgtttttatcagaaaaagaaacaatgca |
37007908 |
T |
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| Q |
306 |
aaaatttggaacctcaaagggatttgttgaatcagctactcatattttggaagggattacatctgaccttcacaaatctcttgaccttgaagcagcaagc |
405 |
Q |
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| T |
37007907 |
aaaatttggaacctcaaagggatttgttgaatcagctactcatattttggaagggattacatctgaccttcacaaatctcttgaccttgaagcagcaagc |
37007808 |
T |
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| Q |
406 |
aaagttgc |
413 |
Q |
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| T |
37007807 |
aaagttgc |
37007800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 37025534 - 37025463
Alignment:
| Q |
9 |
ggacatcaagggattatatatgctggaacaaattgctttcatagaagaaaagttatgtatggtctttctcct |
80 |
Q |
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| T |
37025534 |
ggacttcaagggatgctatacgcaggaacaaattgcttccatagaagaaaagtaatttatggcctttctcct |
37025463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 37024739 - 37024687
Alignment:
| Q |
309 |
atttggaacctcaaagggatttgttgaatcagctactcatattttggaaggga |
361 |
Q |
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| T |
37024739 |
atttggaacttcaaagagatttattgaatcagctactcatgctttagaaggga |
37024687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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