View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_13 (Length: 390)
Name: NF8521_low_13
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 358
Target Start/End: Original strand, 19514272 - 19514621
Alignment:
| Q |
9 |
agcagagacagaccaagtaagtgcatcagaggaaagatcaagcatatcaatgcaatcagaaacagcattagagagacgtgaatctccaaatccagaacca |
108 |
Q |
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| T |
19514272 |
agcagaggcagaccaagtaagtgcatcagaggaaagatcaagcatatcaatgcaatcagaaacagcattagagagacgtgaatctccaaatccagaacca |
19514371 |
T |
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| Q |
109 |
ccaaattgagaaagaatggacattacttcttgcaaaatgccaacaacatcttgcactgtcccaacaaattcagatggagcaaccttaagaaactcaaatt |
208 |
Q |
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| T |
19514372 |
ccaaattgagaaagaatggacattacttcttgcaaaatgccaacaacatcttgcactgtcccaacaaattcagatggagcaaccttaagaaactcaaatt |
19514471 |
T |
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| Q |
209 |
cagatgctgctttagtgggagcactagcacatagtgctggagtagacaacaataatgttaaaatgaatgtgcatgttatgagagtgggtattggttttgt |
308 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19514472 |
cagatgttgctttagtgggagcactagcacatagtgctggagtagacaacaataatgttaaaatgaatgtgcatgttatgagagtgggtattggttttgt |
19514571 |
T |
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| Q |
309 |
tcgagatagtactaactcttttgttgaagaaagagccattggaagaaaag |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19514572 |
tcgagatagtactaactcttttgttgaagaaagagccattggaagaaaag |
19514621 |
T |
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