View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_14 (Length: 389)
Name: NF8521_low_14
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 11330243 - 11330566
Alignment:
| Q |
10 |
ataattctgaggtacatactacattggaacaagaataagataatagtttgattaaattttcagttgctactgatcatcttattagatatagcgaatggaa |
109 |
Q |
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| T |
11330243 |
ataattctgaggtacatactacattggaacaagaataagataatagtttgattaaattttcagttgctactgatcatcttattagatatagcaaatggaa |
11330342 |
T |
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| Q |
110 |
taagtaacataacctttcagaaaagactaatattaacaatgtccaatactatgttgagcaggttagcctagatattaccctaagtagagtgcctacttag |
209 |
Q |
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| T |
11330343 |
taagtaacataacctttcagaaaagactaatattaacaatgtccaatactatgttgagcaggttagcctagatattaccctaagtagagtgcctacttag |
11330442 |
T |
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| Q |
210 |
attatagcagtaaaattcatcaaactctaaagggaagtgaaattggacgttcatgcagcaacttcaatcaataagtataacttttttctatcggccaatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
11330443 |
attatagcagtaaaattcatcaaactctaaagggaagtgaaattggacattcatgcagcaacttcaatcaataagtataacttttttctataggcaaatg |
11330542 |
T |
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| Q |
310 |
ttagttgttacttgttagtaaatt |
333 |
Q |
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|||||||||||||||||||||||| |
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| T |
11330543 |
ttagttgttacttgttagtaaatt |
11330566 |
T |
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