View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_low_15 (Length: 382)

Name: NF8521_low_15
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_low_15
NF8521_low_15
[»] chr3 (5 HSPs)
chr3 (23-363)||(36280768-36281110)
chr3 (25-304)||(7129924-7130206)
chr3 (25-309)||(6820626-6820907)
chr3 (262-297)||(48352158-48352193)
chr3 (249-298)||(26955807-26955856)
[»] chr8 (2 HSPs)
chr8 (27-363)||(33178045-33178381)
chr8 (242-299)||(15038747-15038804)
[»] chr4 (2 HSPs)
chr4 (29-158)||(1072477-1072606)
chr4 (235-304)||(1072686-1072755)
[»] chr1 (3 HSPs)
chr1 (247-363)||(16305297-16305411)
chr1 (262-297)||(48710362-48710397)
chr1 (262-298)||(13216975-13217011)
[»] chr5 (2 HSPs)
chr5 (262-297)||(27515880-27515915)
chr5 (262-298)||(42918027-42918063)
[»] chr6 (1 HSPs)
chr6 (242-307)||(2845423-2845488)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 23 - 363
Target Start/End: Complemental strand, 36281110 - 36280768
Alignment:
Q  23 taggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatggga 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36281110 taggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataaaattagttggaagatgtgtgatggga 36281011  T
Q  123 attctactttgtttttgttagattcctgattggatgatatgtccctgagatac--ttatagaagattatacgagttagctgatataaattgacaaatgta 220  Q
    ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  36281010 attttactttgtttttgttagatccctgattggatgatatgcccctgagatacacttatagaagattatacgagttagctgatataaattgacaaatgta 36280911  T
Q  221 gagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgt 320  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  36280910 gagaatgtgttcattatggggtggggagtgaacggtgaggagtggaagtggcgtaggaggttatttgcttgggaggaagagttggtgagagagagtgtgt 36280811  T
Q  321 tgggcggttaattccaatggttttacaggttggatcagttgat 363  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  36280810 tgggcggctaactccaatggttttacaggttggatcagttgat 36280768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 7130206 - 7129924
Alignment:
Q  25 ggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatgggaat 124  Q
    ||||||| |||||||||||| |||||| ||| ||||||||||||||||||||| || |||| |||||||||| ||||||  |||  || |||||| || |    
T  7130206 ggtgtggcggcagactatgaaaagtataagaaagggcgtgggtcaggtggatgttgggtggttgagagataacattagtcagaacgtgggtgatgcgact 7130107  T
Q  125 tctactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctgat-ataaattgacaaatgtag 221  Q
    |||||| |||||| ||||||| |||| |||| || ||||  |||||  || | || | |||||||||| |||||||| ||| | |||||| ||| |||||    
T  7130106 tctactatgttttggttagatccctggttgggtggtatgctcctgaaggagagttttggaagattatatgagttagcggataaaaaattggcaattgtag 7130007  T
Q  222 agaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg 304  Q
    || || |||| ||||| |||||||| | ||| ||||||  ||| |||||| |||||||||| ||| ||||||||||| |||||    
T  7130006 agcatatgtttattatagggtggggagagaatggtgaggcgtgtaagtggtgtaggaggttgttttcttgggaggaagagttg 7129924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 309
Target Start/End: Original strand, 6820626 - 6820907
Alignment:
Q  25 ggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatgggaat 124  Q
    |||||| ||||| | |||||||||||||  |||||| |||||||||| || ||||       |||||||||| ||||||| |||  || ||||||||||     
T  6820626 ggtgtgatggcatattatgagaagtatctaagagggtgtgggtcaggcgggtggt-------tgagagataacattagttagaacgtgggtgatgggaac 6820718  T
Q  125 tctactttgtttttgttagattcctgatt-ggatgatatgtccctgag--atacttatagaagattatacgagttagctgata-taaattgacaaatgta 220  Q
    |||||| |||||| ||||||| | || || ||||| | || || ||||  ||| ||||||||||||||| ||||||||||| | ||||||| ||| ||||    
T  6820719 tctactctgttttggttagatccttggtttggatggtttgcccttgagggatagttatagaagattatatgagttagctgacaataaattggcaactgta 6820818  T
Q  221 gagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgag 309  Q
    |||||| |||||| ||   | ||||| |||||||||||| ||||||||| ||||| |||||||||||||||| ||||| ||||||||||    
T  6820819 gagaatatgttcactacatgatggggagtgaacggtgaggagtggaagtagcgtatgaggttatttgcttggaaggaagagttggtgag 6820907  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 297
Target Start/End: Original strand, 48352158 - 48352193
Alignment:
Q  262 gtggaagtggcgtaggaggttatttgcttgggagga 297  Q
    |||||||||||| |||||||||||||||||||||||    
T  48352158 gtggaagtggcggaggaggttatttgcttgggagga 48352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 26955856 - 26955807
Alignment:
Q  249 tgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaa 298  Q
    |||| ||||||| ||| |||||||||| |||||| |||||||||||||||    
T  26955856 tgaatggtgagacgtgaaagtggcgtaagaggttgtttgcttgggaggaa 26955807  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 363
Target Start/End: Complemental strand, 33178381 - 33178045
Alignment:
Q  27 tgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatgggaattc 126  Q
    |||||||||||| ||| |||| ||| |||||||  ||||| || |||||||| | |||| | || |||||||||||  ||||| || | ||||| || ||    
T  33178381 tgtggtggcagagtataagaaatattagagaggaggtgggacaagtggatggagggtggttaagggataatattagccggaaggtgggggatggaaactc 33178282  T
Q  127 tactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctgatataaattgacaaatgtagaga 224  Q
    |||| |||||| | ||||| | || ||||||| |||| | ||||  |||  || |  |||||| ||||||||| |||  |||| ||||||| ||| | |     
T  33178281 tactctgttttgggtagatccgtggttggatggtatgcctctgaaggattgttttcaaagattttacgagttaactgcaataagttgacaactgtggtgg 33178182  T
Q  225 atgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttggg 324  Q
    || ||||   ||||||||||||| |||| || |||  |||||||||||||  |||||| || |||||||||||| |||||||||| |||  ||||| |||    
T  33178181 atatgttttctatggggtgggggctgaatggagaggcgtggaagtggcgtcagaggttgttcgcttgggaggaagagttggtgagggag--tgtgtaggg 33178084  T
Q  325 cggttaattccaatggttttacaggttggatcagttgat 363  Q
    ||  ||| |||| | ||||||||||||||||||| ||||    
T  33178083 cgtctaactccagttgttttacaggttggatcaggtgat 33178045  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 15038804 - 15038747
Alignment:
Q  242 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaa 299  Q
    ||||| ||||||||||||  |||||||||| |||||| ||| ||||||||||||||||    
T  15038804 tggggagtgaacggtgagccgtggaagtggtgtaggacgttgtttgcttgggaggaaa 15038747  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 1072477 - 1072606
Alignment:
Q  29 tggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatgggaattcta 128  Q
    ||||||||||||||||||| ||| |||||||| || || || |||||||| | ||| |||||||||||||||||| ||||| || || ||| ||||| ||    
T  1072477 tggtggcagactatgagaaatattagagagggagtaggacacgtggatggagggtgactgagagataatattagtcggaaggtgggtaatgagaatttta 1072576  T
Q  129 ctttgtttttgttagattcctgattggatg 158  Q
    ||||||||| |||||||  ||| |||||||    
T  1072577 ctttgttttggttagatctctggttggatg 1072606  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 1072686 - 1072755
Alignment:
Q  235 tatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg 304  Q
    |||||||||||| ||||| ||||||  ||| ||||| |||||||||||| | | |||||||||| |||||    
T  1072686 tatggggtggggtgtgaatggtgaggcgtgcaagtgtcgtaggaggttactcgtttgggaggaagagttg 1072755  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 363
Target Start/End: Complemental strand, 16305411 - 16305297
Alignment:
Q  247 ggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttgggcggttaattccaatggttttac 346  Q
    |||||| ||||||  |||||||| | ||||||||||||| |||||||||||| ||||| |||| |||  |||||| ||| | ||| |  | ||||||| |    
T  16305411 ggtgaatggtgaggtgtggaagttgtgtaggaggttattcgcttgggaggaagagttgctgagggag--tgtgttaggcagctaacttgagtggttttgc 16305314  T
Q  347 aggttggatcagttgat 363  Q
    |||||||| ||||||||    
T  16305313 aggttggaacagttgat 16305297  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 297
Target Start/End: Complemental strand, 48710397 - 48710362
Alignment:
Q  262 gtggaagtggcgtaggaggttatttgcttgggagga 297  Q
    ||||||||||||||||||||||||||| ||||||||    
T  48710397 gtggaagtggcgtaggaggttatttgcgtgggagga 48710362  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 13217011 - 13216975
Alignment:
Q  262 gtggaagtggcgtaggaggttatttgcttgggaggaa 298  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  13217011 gtggaagtggagtaggaggttattagcttgggaggaa 13216975  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 297
Target Start/End: Complemental strand, 27515915 - 27515880
Alignment:
Q  262 gtggaagtggcgtaggaggttatttgcttgggagga 297  Q
    ||||||||||||||||||||||||||| ||||||||    
T  27515915 gtggaagtggcgtaggaggttatttgcgtgggagga 27515880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 42918027 - 42918063
Alignment:
Q  262 gtggaagtggcgtaggaggttatttgcttgggaggaa 298  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  42918027 gtggaaatggcggaggaggttatttgcttgggaggaa 42918063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 2845488 - 2845423
Alignment:
Q  242 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtg 307  Q
    ||||| ||||||||||||| | |||||||||| ||||| || |||||||| || || |||||||||    
T  2845488 tggggagtgaacggtgagacgaggaagtggcgaaggagattgtttgcttgagatgagaagttggtg 2845423  T

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