View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_16 (Length: 375)
Name: NF8521_low_16
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 30574009 - 30573653
Alignment:
| Q |
1 |
aaaactcagtatgtgacctaaggaccgactaatccgaaaggtcaaatcccacatcgacttacggggacccttttaaagttagagcaaaactctatatgga |
100 |
Q |
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| T |
30574009 |
aaaactcaatatctgacctaaggaccgactaatccgaaaggtcaaatcccacatcgacttgtggggacccttttaaagttagagcaaaactctatatgga |
30573910 |
T |
|
| Q |
101 |
ctatcccaccgaactgctgtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaat |
200 |
Q |
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| T |
30573909 |
ctatcccaccgaactgctgtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaat |
30573810 |
T |
|
| Q |
201 |
gtttatccaaacatatgcttaatggtttatcagtgtatttatatttggtttgtgagagagattaaaagaaatatcactactagtcatggttacattcata |
300 |
Q |
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| T |
30573809 |
gtttatccaaacatatgcttaatggtttatcagtgtatttatatttggtttgtgagagagattaaaagaaatatcattactagtcatggttacattcata |
30573710 |
T |
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| Q |
301 |
ttataaaaagtttacccttaatattatcctcaacggatctcacaatgatatctgaaa |
357 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30573709 |
ttataaaaagtttacccataatattatcctcaacggatctcacaatgatatctgaaa |
30573653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 30570415 - 30570277
Alignment:
| Q |
119 |
gtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30570415 |
gtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgc |
30570316 |
T |
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| Q |
219 |
ttaatggtttatcagtgtatttatatttggtttgtgaga |
257 |
Q |
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| T |
30570315 |
ttaatggtttattagtgtatttatatttggcttgtgaga |
30570277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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