View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_low_17 (Length: 369)

Name: NF8521_low_17
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_low_17
NF8521_low_17
[»] chr8 (21 HSPs)
chr8 (1-223)||(30191647-30191869)
chr8 (1-112)||(30186849-30186960)
chr8 (286-350)||(30192062-30192126)
chr8 (224-285)||(41313351-41313411)
chr8 (224-285)||(27781077-27781138)
chr8 (224-285)||(41694019-41694079)
chr8 (229-285)||(39320176-39320231)
chr8 (249-285)||(28709307-28709343)
chr8 (249-285)||(28716664-28716700)
chr8 (249-285)||(34395458-34395494)
chr8 (249-285)||(42142845-42142881)
chr8 (224-270)||(1893974-1894020)
chr8 (249-285)||(17081654-17081690)
chr8 (249-285)||(22878035-22878071)
chr8 (249-285)||(25023306-25023342)
chr8 (249-285)||(31478076-31478112)
chr8 (249-285)||(31581694-31581730)
chr8 (249-285)||(32541223-32541259)
chr8 (249-285)||(36590136-36590172)
chr8 (249-285)||(39871265-39871301)
chr8 (249-285)||(45141565-45141601)
[»] chr4 (32 HSPs)
chr4 (224-285)||(3009684-3009744)
chr4 (224-285)||(35467987-35468048)
chr4 (224-285)||(4355703-4355764)
chr4 (224-285)||(29413504-29413564)
chr4 (224-270)||(7706337-7706383)
chr4 (224-285)||(4939496-4939557)
chr4 (224-285)||(11152050-11152110)
chr4 (224-285)||(29663902-29663962)
chr4 (224-285)||(36008116-36008177)
chr4 (225-285)||(33005239-33005299)
chr4 (249-285)||(4517302-4517338)
chr4 (249-285)||(12234078-12234114)
chr4 (251-285)||(8941903-8941937)
chr4 (224-270)||(28307220-28307266)
chr4 (244-285)||(23867980-23868021)
chr4 (244-285)||(31678961-31679002)
chr4 (249-285)||(9043722-9043758)
chr4 (249-285)||(11600680-11600716)
chr4 (249-285)||(18582841-18582877)
chr4 (249-285)||(22038468-22038504)
chr4 (249-285)||(27397877-27397913)
chr4 (249-285)||(28307252-28307288)
chr4 (249-285)||(35777497-35777533)
chr4 (249-285)||(40528360-40528396)
chr4 (249-285)||(42116893-42116929)
chr4 (249-285)||(45780848-45780884)
chr4 (249-285)||(46895280-46895316)
chr4 (249-285)||(47417586-47417622)
chr4 (249-285)||(53273115-53273151)
chr4 (249-285)||(53407186-53407222)
chr4 (249-285)||(55495991-55496027)
chr4 (249-285)||(56372432-56372468)
[»] chr3 (30 HSPs)
chr3 (224-285)||(48942967-48943028)
chr3 (227-285)||(54542050-54542108)
chr3 (224-285)||(52788652-52788713)
chr3 (224-285)||(52794871-52794932)
chr3 (224-285)||(53779007-53779068)
chr3 (224-281)||(4240255-4240311)
chr3 (224-281)||(37714084-37714141)
chr3 (244-281)||(50317148-50317185)
chr3 (244-285)||(55305224-55305265)
chr3 (249-285)||(41785810-41785846)
chr3 (224-270)||(8872842-8872888)
chr3 (224-270)||(37528860-37528906)
chr3 (244-282)||(39469909-39469947)
chr3 (251-285)||(52931248-52931282)
chr3 (249-285)||(8872874-8872910)
chr3 (249-285)||(16127254-16127290)
chr3 (249-285)||(21707152-21707188)
chr3 (249-285)||(25570380-25570416)
chr3 (249-285)||(26540961-26540997)
chr3 (249-285)||(29081396-29081432)
chr3 (249-285)||(35499602-35499638)
chr3 (249-285)||(37088285-37088321)
chr3 (249-285)||(38185771-38185807)
chr3 (249-285)||(40480136-40480172)
chr3 (249-285)||(40563478-40563514)
chr3 (249-285)||(42465142-42465178)
chr3 (249-285)||(44545231-44545267)
chr3 (249-285)||(44748901-44748937)
chr3 (249-285)||(44845625-44845661)
chr3 (249-285)||(45345123-45345159)
[»] chr1 (25 HSPs)
chr1 (224-285)||(3270638-3270699)
chr1 (224-285)||(38967558-38967618)
chr1 (224-285)||(46369784-46369845)
chr1 (225-285)||(50351012-50351072)
chr1 (249-285)||(44909844-44909880)
chr1 (224-270)||(7711071-7711117)
chr1 (224-270)||(30721741-30721787)
chr1 (224-270)||(36838812-36838858)
chr1 (244-285)||(322864-322905)
chr1 (249-285)||(1918029-1918065)
chr1 (249-285)||(2479164-2479200)
chr1 (249-285)||(13121679-13121715)
chr1 (249-285)||(17046733-17046769)
chr1 (249-285)||(26843755-26843791)
chr1 (249-285)||(29586162-29586198)
chr1 (249-285)||(30721719-30721755)
chr1 (249-285)||(31150520-31150556)
chr1 (249-285)||(33561990-33562026)
chr1 (249-285)||(36301199-36301235)
chr1 (249-285)||(36838790-36838826)
chr1 (249-285)||(38676493-38676529)
chr1 (249-285)||(39826604-39826640)
chr1 (249-285)||(42064412-42064448)
chr1 (249-285)||(47134626-47134662)
chr1 (249-285)||(49220568-49220604)
[»] chr7 (19 HSPs)
chr7 (223-285)||(27089774-27089836)
chr7 (223-285)||(27188465-27188527)
chr7 (244-285)||(31511296-31511337)
chr7 (244-285)||(35587575-35587616)
chr7 (224-285)||(48832171-48832231)
chr7 (249-285)||(21254815-21254851)
chr7 (227-285)||(1342755-1342813)
chr7 (244-285)||(45222191-45222232)
chr7 (249-285)||(10312147-10312183)
chr7 (249-285)||(21313909-21313945)
chr7 (249-285)||(28425729-28425765)
chr7 (225-285)||(33026854-33026914)
chr7 (249-285)||(36246494-36246530)
chr7 (249-285)||(40637278-40637314)
chr7 (249-285)||(42375900-42375936)
chr7 (249-285)||(42587501-42587537)
chr7 (249-285)||(43254104-43254140)
chr7 (249-285)||(45687034-45687070)
chr7 (249-285)||(47471080-47471116)
[»] chr2 (23 HSPs)
chr2 (224-285)||(24402159-24402220)
chr2 (224-285)||(43507669-43507730)
chr2 (224-285)||(17263860-17263921)
chr2 (249-285)||(8815211-8815247)
chr2 (249-285)||(10839687-10839723)
chr2 (249-285)||(13528011-13528047)
chr2 (249-285)||(18710188-18710224)
chr2 (244-285)||(29514827-29514868)
chr2 (249-285)||(2546431-2546467)
chr2 (249-285)||(3377390-3377426)
chr2 (249-285)||(4453630-4453666)
chr2 (249-285)||(5039773-5039809)
chr2 (249-285)||(9886990-9887026)
chr2 (249-285)||(13111850-13111886)
chr2 (249-285)||(15521477-15521513)
chr2 (249-285)||(16486880-16486916)
chr2 (249-285)||(18212118-18212154)
chr2 (249-285)||(21865244-21865280)
chr2 (249-285)||(26911510-26911546)
chr2 (249-285)||(28382787-28382823)
chr2 (249-285)||(36712643-36712679)
chr2 (249-285)||(38579115-38579151)
chr2 (249-285)||(41322754-41322790)
[»] chr6 (12 HSPs)
chr6 (227-285)||(10856111-10856169)
chr6 (224-285)||(558336-558396)
chr6 (224-285)||(3108117-3108178)
chr6 (224-285)||(6709806-6709867)
chr6 (244-285)||(34685125-34685166)
chr6 (224-270)||(31452086-31452132)
chr6 (249-285)||(2442425-2442461)
chr6 (249-285)||(31100125-31100161)
chr6 (249-285)||(31452064-31452100)
chr6 (249-285)||(32731759-32731795)
chr6 (249-285)||(34233025-34233061)
chr6 (249-285)||(34903960-34903996)
[»] chr5 (23 HSPs)
chr5 (224-285)||(5997995-5998056)
chr5 (224-270)||(1711326-1711372)
chr5 (224-285)||(9160793-9160854)
chr5 (224-285)||(35235828-35235889)
chr5 (244-285)||(39246937-39246978)
chr5 (249-285)||(36685816-36685852)
chr5 (249-285)||(39275423-39275459)
chr5 (224-270)||(2236639-2236685)
chr5 (248-285)||(16474770-16474807)
chr5 (244-285)||(27130328-27130369)
chr5 (249-285)||(2236617-2236653)
chr5 (249-285)||(2671414-2671450)
chr5 (249-285)||(4221574-4221610)
chr5 (249-285)||(5591588-5591624)
chr5 (249-285)||(12713312-12713348)
chr5 (249-285)||(12774576-12774612)
chr5 (249-285)||(13228573-13228609)
chr5 (249-285)||(14647458-14647494)
chr5 (249-285)||(19525749-19525785)
chr5 (249-285)||(24793972-24794008)
chr5 (249-285)||(30299698-30299734)
chr5 (249-285)||(30412713-30412749)
chr5 (249-285)||(39744643-39744679)
[»] scaffold0122 (1 HSPs)
scaffold0122 (224-270)||(12849-12895)
[»] scaffold0166 (1 HSPs)
scaffold0166 (249-285)||(36355-36391)
[»] scaffold0116 (1 HSPs)
scaffold0116 (249-285)||(22595-22631)
[»] scaffold0075 (1 HSPs)
scaffold0075 (249-285)||(27245-27281)
[»] scaffold0031 (1 HSPs)
scaffold0031 (249-285)||(126870-126906)
[»] scaffold0027 (1 HSPs)
scaffold0027 (249-285)||(41855-41891)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30191647 - 30191869
Alignment:
Q  1 tgctaatgttcagctcttttctgcagtccttgctgttcatgtaggaactatagcttcctttggatttgcagcttcaagatatgggaattttgaagaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30191647 tgctaatgttcagctcttttctgcagtccttgctgttcatgtaggaactatagcttcctttggatttgcagcttcaagatatgggaattttgaagaactt 30191746  T
Q  101 gctcccaattaataataagatgaagattgaagtagactgtgatattatgtttccattaannnnnnngttggtgaagtggtttttggaagctgtagattat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  30191747 gctcccaattaataataagatgaagattgaagtagactgtgatattatgtttccattaatttttttgttggtgaagtggtttttggaagctgtagattat 30191846  T
Q  201 ttatttatttgagagtatacact 223  Q
    |||||||||||||||||||||||    
T  30191847 ttatttatttgagagtatacact 30191869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 30186849 - 30186960
Alignment:
Q  1 tgctaatgttcagctcttttctgcagtccttgctgttcatgtaggaactatagcttcctttggatttgcagcttcaagatatgggaattttgaagaactt 100  Q
    ||||||| |||||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||    
T  30186849 tgctaattttcagctcttttttgcagtccttgttgttcttgtaggaactacagcttcctatggctttgcagcttcaagatatgggaattttgaagaagtt 30186948  T
Q  101 gctcccaattaa 112  Q
    ||||| ||||||    
T  30186949 gctcctaattaa 30186960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 30192062 - 30192126
Alignment:
Q  286 ttagtacggtttctcctggttcaacatcaattagttcttttgctatacaaaggaaaatagcggac 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30192062 ttagtacggtttctcctggttcaacatcaattagttcttttgctatacaaaggaaaatagcggac 30192126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 41313351 - 41313411
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  41313351 gtctgtttgggaaa-ccaaaaaaagagcttttagcttatagcttataaactcgtttgacaaa 41313411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 27781077 - 27781138
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||   || ||||||||||||| |||||||||||||| |||||||||||||    
T  27781077 gtctgtttgggaaactaaaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 27781138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 41694079 - 41694019
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||  ||| ||||||||||||| |||||||||||||| |||||||||||||    
T  41694079 gtctgtttgggaaactcaa-aaaagagcttttagcttatagcttataagctcgtttgacaaa 41694019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 39320231 - 39320176
Alignment:
Q  229 tttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  39320231 tttgggaaatccaa-aaaagagcttttagcttatagcttataaattcgtttgacaaa 39320176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 28709307 - 28709343
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28709307 agcttttaacttatagcttataagctcgtttgacaaa 28709343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 28716664 - 28716700
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28716664 agcttttaacttatagcttataagctcgtttgacaaa 28716700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 34395494 - 34395458
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34395494 agcttttaacttatagcttataagctcgtttgacaaa 34395458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 42142881 - 42142845
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42142881 agcttttaacttatagcttataagctcgtttgacaaa 42142845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 1894020 - 1893974
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||||||    
T  1894020 gtctgtttgggaaacccaaaaaaagagcttttagcttttagcttata 1893974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 17081654 - 17081690
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  17081654 agcttttagcttatagcttataagctcgtttgacaaa 17081690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 22878071 - 22878035
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||| |||||||||||||||||| |||||||||||||    
T  22878071 agctcttaacttatagcttataagctcgtttgacaaa 22878035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 25023306 - 25023342
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  25023306 agcttttagcttatagcttataagctcgtttgacaaa 25023342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 31478076 - 31478112
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  31478076 agcttttagcttatagcttataagctcgtttgacaaa 31478112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 31581694 - 31581730
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  31581694 agcttttagcttatagcttataagctcgtttgacaaa 31581730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 32541223 - 32541259
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  32541223 agcttttagcttatagcttataagctcgtttgacaaa 32541259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 36590136 - 36590172
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||| |||| |||||||||||||||||||||||||||    
T  36590136 agctcttaatttatagcttataaactcgtttgacaaa 36590172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 39871265 - 39871301
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  39871265 agcttttagcttatagcttataagctcgtttgacaaa 39871301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 45141601 - 45141565
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  45141601 agcttttagcttatagcttataagctcgtttgacaaa 45141565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 3009684 - 3009744
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  3009684 gtctgtttgg-aaaaccaaaaaaagagcttttagcttatagcttataaactcgtttgacaaa 3009744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 35467987 - 35468048
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||| |||||||||||||    
T  35467987 gtctgtttgggaaactcaaaaaaagagcttttaacttatagcttataagctcgtttgacaaa 35468048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 4355764 - 4355703
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||| ||| |||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  4355764 gtctgtttggtaaacccaaaaaaagagcttttagcttatagcttataaattcgtttgacaaa 4355703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 29413504 - 29413564
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||    
T  29413504 gtctgtttgggaaatccaa-aaaagagcttttagcttatagcttataagctcgtttgacaaa 29413564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 7706337 - 7706383
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  7706337 gtctgtttgggaaaaccaagaaaagagcttttagcttttagcttata 7706383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 4939557 - 4939496
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| || | ||||||||||||| ||||||| |||||| |||||||||||||    
T  4939557 gtctgtttgggaaaccctaaaaaagagcttttagcttatagtttataagctcgtttgacaaa 4939496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 11152110 - 11152050
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| | || ||||||||||||| |||||||||||||| |||||||||||||    
T  11152110 gtctgtttgggaaa-ctaaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 11152050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 29663902 - 29663962
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| | || ||||||||||||| |||||||||||||| |||||||||||||    
T  29663902 gtctgtttgggaaa-caaaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 29663962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 36008177 - 36008116
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||| ||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  36008177 gtctctttgggaaaccccaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 36008116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 33005299 - 33005239
Alignment:
Q  225 tctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||   || ||||||||||||| |||||||||||||| |||||||||||||    
T  33005299 tctgtttgggaaactaaaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 33005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 4517338 - 4517302
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4517338 agcttttaacttatagcttataagctcgtttgacaaa 4517302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 12234114 - 12234078
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12234114 agcttttaacttatagcttataagctcgtttgacaaa 12234078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 8941903 - 8941937
Alignment:
Q  251 cttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||| |||||||||||||    
T  8941903 cttttaacttatagcttataagctcgtttgacaaa 8941937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 28307220 - 28307266
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||||||    
T  28307220 gtctgtttgggaaacccaaaaaaagagcttttagcttttagcttata 28307266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 23868021 - 23867980
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| |||||||||||||| ||| |||||||||    
T  23868021 aaaagagcttttagcttatagcttataagctcttttgacaaa 23867980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 31678961 - 31679002
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||| ||||| |||||||||||||| |||||||||||||    
T  31678961 aaaagagtttttagcttatagcttataagctcgtttgacaaa 31679002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 9043758 - 9043722
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  9043758 agcttttagcttatagcttataagctcgtttgacaaa 9043722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 11600680 - 11600716
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  11600680 agcttttagcttatagcttataagctcgtttgacaaa 11600716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 18582841 - 18582877
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  18582841 agcttttagcttatagcttataagctcgtttgacaaa 18582877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 22038504 - 22038468
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  22038504 agcttttagcttatagcttataagctcgtttgacaaa 22038468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 27397913 - 27397877
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  27397913 agcttttagcttatagcttataagctcgtttgacaaa 27397877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 28307252 - 28307288
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  28307252 agcttttagcttatagcttataagctcgtttgacaaa 28307288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 35777533 - 35777497
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  35777533 agcttttagcttatagcttataagctcgtttgacaaa 35777497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 40528396 - 40528360
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  40528396 agctcttaacttatagcttataaattcgtttgacaaa 40528360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 42116893 - 42116929
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  42116893 agcttttagcttatagcttataagctcgtttgacaaa 42116929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 45780884 - 45780848
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  45780884 agcttttagcttatagcttataagctcgtttgacaaa 45780848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 46895280 - 46895316
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  46895280 agcttttagcttatagcttataagctcgtttgacaaa 46895316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 47417622 - 47417586
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  47417622 agcttttagcttatagcttataagctcgtttgacaaa 47417586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 53273115 - 53273151
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  53273115 agcttttagcttatagcttataagctcgtttgacaaa 53273151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 53407186 - 53407222
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  53407186 agcttttagcttatagcttataagctcgtttgacaaa 53407222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 55496027 - 55495991
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  55496027 agcttttagcttatagcttataagctcgtttgacaaa 55495991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 56372432 - 56372468
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  56372432 agcttttagcttatagcttataagctcgtttgacaaa 56372468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 48942967 - 48943028
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||    
T  48942967 gtctgtttgggaaacccaaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 48943028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 54542108 - 54542050
Alignment:
Q  227 tgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  54542108 tgtttgggaaaccctaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 54542050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 52788652 - 52788713
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||| ||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  52788652 gtctctttgggaaaccccaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 52788713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 52794871 - 52794932
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||| ||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  52794871 gtctctttgggaaaccccaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 52794932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 53779007 - 53779068
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| | || ||||||||||||| ||| |||||||||| |||||||||||||    
T  53779007 gtctgtttgggaaacctaaaaaaagagcttttagcttttagcttataagctcgtttgacaaa 53779068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 4240255 - 4240311
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttga 281  Q
    |||||||||||||| |||| ||||||||||||| |||||| ||||||| |||||||||    
T  4240255 gtctgtttgggaaacccaa-aaaagagcttttagcttataacttataagctcgtttga 4240311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 37714141 - 37714084
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttga 281  Q
    ||||||||||||||   || ||||||||||||| |||||||||||||| |||||||||    
T  37714141 gtctgtttgggaaactaaaaaaaagagcttttagcttatagcttataagctcgtttga 37714084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 50317185 - 50317148
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttga 281  Q
    |||||||||||||||||||||||||||| |||||||||    
T  50317185 aaaagagcttttaacttatagcttataagctcgtttga 50317148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 55305265 - 55305224
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  55305265 aaaagagcttttagcttatagcttataagctcgtttgacaaa 55305224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 41785810 - 41785846
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  41785810 agcttttaacttatagcttataagctcgtttgacaaa 41785846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 8872842 - 8872888
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||||||    
T  8872842 gtctgtttgggaaacccaaaaaaagagcttttagcttttagcttata 8872888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 37528906 - 37528860
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| |||| |||||||||||| |||||||||    
T  37528906 gtctgtttgggaaacccaaaaaaaaagcttttaacttttagcttata 37528860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 39469909 - 39469947
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgac 282  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  39469909 aaaagagcttttagcttatagcttataagctcgtttgac 39469947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 285
Target Start/End: Complemental strand, 52931282 - 52931248
Alignment:
Q  251 cttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| ||||||||||||||||||||    
T  52931282 cttttaacttatagtttataaactcgtttgacaaa 52931248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 8872874 - 8872910
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  8872874 agcttttagcttatagcttataagctcgtttgacaaa 8872910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 16127290 - 16127254
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  16127290 agcttttagcttatagcttataagctcgtttgacaaa 16127254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 21707152 - 21707188
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  21707152 agcttttaacttatagcttataagctcgtttaacaaa 21707188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 25570380 - 25570416
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  25570380 agcttttagcttatagcttataagctcgtttgacaaa 25570416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 26540961 - 26540997
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  26540961 agcttttagcttatagcttataagctcgtttgacaaa 26540997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 29081432 - 29081396
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  29081432 agcttttagcttatagcttataagctcgtttgacaaa 29081396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 35499602 - 35499638
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  35499602 agcttttagcttatagcttataagctcgtttgacaaa 35499638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 37088285 - 37088321
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  37088285 agcttttagcttatagcttataagctcgtttgacaaa 37088321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 38185771 - 38185807
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  38185771 agcttttagcttatagcttataagctcgtttgacaaa 38185807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 40480172 - 40480136
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  40480172 agcttttagcttatagcttataagctcgtttgacaaa 40480136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 40563514 - 40563478
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  40563514 agcttttagcttatagcttataagctcgtttgacaaa 40563478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 42465178 - 42465142
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||| |||||||||||||||||| |||||||||||||    
T  42465178 agctcttaacttatagcttataagctcgtttgacaaa 42465142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 44545231 - 44545267
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  44545231 agcttttagcttatagcttataagctcgtttgacaaa 44545267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 44748937 - 44748901
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  44748937 agcttttagcttatagcttataaacttgtttgacaaa 44748901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 44845625 - 44845661
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  44845625 agcttttagcttatagcttataagctcgtttgacaaa 44845661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 45345159 - 45345123
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  45345159 agcttttagcttatagcttataagctcgtttgacaaa 45345123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 3270638 - 3270699
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||    
T  3270638 gtctgtttgggaaacccaaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 3270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 38967618 - 38967558
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||||| || ||||||||||||| |||||||||||||| |||||||||||||    
T  38967618 gtctgtttgggaaaacaaa-aaaagagcttttagcttatagcttataagctcgtttgacaaa 38967558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 46369784 - 46369845
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  46369784 gtctgtttgggaaaccccaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 46369845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 50351012 - 50351072
Alignment:
Q  225 tctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||  | | ||||||||||||| |||||||||||||| |||||||||||||    
T  50351012 tctgtttgggaaactccaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 50351072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 44909844 - 44909880
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  44909844 agcttttaacttatagcttataagctcgtttgacaaa 44909880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 7711117 - 7711071
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||||||    
T  7711117 gtctgtttgggaaacccaaaaaaagagcttttagcttttagcttata 7711071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 30721787 - 30721741
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||||||    
T  30721787 gtctgtttgggaaacccaaaaaaagagcttttagcttttagcttata 30721741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 36838858 - 36838812
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||||||    
T  36838858 gtctgtttgggaaacccaaaaaaagagcttttagcttttagcttata 36838812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 322864 - 322905
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| |||||||||||||| || ||||||||||    
T  322864 aaaagagcttttagcttatagcttataagcttgtttgacaaa 322905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 1918029 - 1918065
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  1918029 agcttttagcttatagcttataagctcgtttgacaaa 1918065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 2479164 - 2479200
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  2479164 agcttttagcttatagcttataagctcgtttgacaaa 2479200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 13121715 - 13121679
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  13121715 agcttttagcttatagcttataagctcgtttgacaaa 13121679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 17046733 - 17046769
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  17046733 agcttttagcttatagcttataagctcgtttgacaaa 17046769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 26843755 - 26843791
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  26843755 agcttttagcttatagcttataagctcgtttgacaaa 26843791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 29586162 - 29586198
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  29586162 agcttttagcttatagcttataagctcgtttgacaaa 29586198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 30721755 - 30721719
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  30721755 agcttttagcttatagcttataagctcgtttgacaaa 30721719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 31150556 - 31150520
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  31150556 agcttttagcttatagcttataagctcgtttgacaaa 31150520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 33562026 - 33561990
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  33562026 agcttttagcttatagcttataagctcgtttgacaaa 33561990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 36301235 - 36301199
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  36301235 agcttttagcttatagcttataagctcgtttgacaaa 36301199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 36838826 - 36838790
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  36838826 agcttttagcttatagcttataagctcgtttgacaaa 36838790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 38676493 - 38676529
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||||| |||||| |||||||||||||    
T  38676493 agcttttaacttatagtttataagctcgtttgacaaa 38676529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 39826604 - 39826640
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  39826604 agcttttagcttatagcttataagctcgtttgacaaa 39826640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 42064448 - 42064412
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  42064448 agcttttagcttatagcttataagctcgtttgacaaa 42064412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 47134662 - 47134626
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  47134662 agcttttaccttatagcttataagctcgtttgacaaa 47134626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 49220604 - 49220568
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  49220604 agcttttagcttatagcttataagctcgtttgacaaa 49220568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 27089836 - 27089774
Alignment:
Q  223 tgtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  27089836 tgtctgtttgggaaaccccaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 27089774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 27188465 - 27188527
Alignment:
Q  223 tgtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  27188465 tgtctgtttgggaaaccccaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 27188527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 31511296 - 31511337
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  31511296 aaaagagcttttagcttatagcttataagctcgtttgacaaa 31511337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 35587575 - 35587616
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  35587575 aaaagagcttttagcttatagcttataagctcgtttgacaaa 35587616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 48832231 - 48832171
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||  |||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  48832231 gtctgtttgggaatcccaa-aaaagagcttttagcttttagcttataagctcgtttgacaaa 48832171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 21254851 - 21254815
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  21254851 agcttttaacttatagcttataagctcgtttgacaaa 21254815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 1342755 - 1342813
Alignment:
Q  227 tgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||| || ||||| |||||||||| || |||||||||||||| ||||| |||||||    
T  1342755 tgtttggtaacaccaaaaaaagagcttatagcttatagcttataagctcgtctgacaaa 1342813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 45222232 - 45222191
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| ||||||| |||||| |||||||||||||    
T  45222232 aaaagagcttttagcttatagtttataagctcgtttgacaaa 45222191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 10312183 - 10312147
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  10312183 agcttttagcttatagcttataagctcgtttgacaaa 10312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 21313945 - 21313909
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||| |||||||||||||||||| |||||||||||||    
T  21313945 agctcttaacttatagcttataagctcgtttgacaaa 21313909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 28425765 - 28425729
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||| || ||||||||||||||||||||||||||||    
T  28425765 agcttatagcttatagcttataaactcgtttgacaaa 28425729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 33026854 - 33026914
Alignment:
Q  225 tctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| |||| ||||||| |||||  |||||| |||||| ||| |||||||||    
T  33026854 tctgtttgggaaacccaaaaaaagagtttttagtttatagtttataagctcctttgacaaa 33026914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 36246530 - 36246494
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  36246530 agcttttagcttatagcttataagctcgtttgacaaa 36246494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 40637314 - 40637278
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  40637314 agcttttagcttatagcttataagctcgtttgacaaa 40637278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 42375936 - 42375900
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  42375936 agcttttagcttatagcttataagctcgtttgacaaa 42375900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 42587537 - 42587501
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  42587537 agcttttagcttatagcttataagctcgtttgacaaa 42587501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 43254104 - 43254140
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  43254104 agcttttagcttatagcttataagctcgtttgacaaa 43254140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 45687070 - 45687034
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  45687070 agcttttagcttatagcttataagctcgtttgacaaa 45687034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 47471116 - 47471080
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  47471116 agcttttagcttatagcttataagctcgtttgacaaa 47471080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 24402220 - 24402159
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  24402220 gtctgtttgggaaacccaaaaaaagagcttttagcttttagcttataagctcgtttgacaaa 24402159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 43507730 - 43507669
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  43507730 gtctgtttgggaaaccctaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 43507669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 17263921 - 17263860
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||| ||| |||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  17263921 gtctgtttggaaaacccaaaaaaagagcttttagcttttagcttataagctcgtttgacaaa 17263860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 8815211 - 8815247
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8815211 agcttttaacttatagcttataagctcgtttgacaaa 8815247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 10839723 - 10839687
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| ||||||||||||||||||||||||||||    
T  10839723 agcttttagcttatagcttataaactcgtttgacaaa 10839687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 13528047 - 13528011
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  13528047 agcttttaacttatagcttataagctcgtttgacaaa 13528011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 18710188 - 18710224
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  18710188 agcttttaacttatagcttataagctcgtttgacaaa 18710224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 29514827 - 29514868
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| ||| |||||||||| |||||||||||||    
T  29514827 aaaagagcttttagcttttagcttataagctcgtttgacaaa 29514868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 2546467 - 2546431
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  2546467 agcttttagcttatagcttataagctcgtttgacaaa 2546431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 3377390 - 3377426
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  3377390 agcttttagcttatagcttataagctcgtttgacaaa 3377426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 4453666 - 4453630
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  4453666 agcttttagcttatagcttataagctcgtttgacaaa 4453630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 5039773 - 5039809
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  5039773 agcttttagcttatagcttataagctcgtttgacaaa 5039809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 9886990 - 9887026
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  9886990 agcttttagcttatagcttataagctcgtttgacaaa 9887026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 13111886 - 13111850
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  13111886 agcttttagcttatagcttataagctcgtttgacaaa 13111850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 15521477 - 15521513
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  15521477 agcttttagcttatagcttataagctcgtttgacaaa 15521513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 16486880 - 16486916
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  16486880 agcttttagcttatagcttataagctcgtttgacaaa 16486916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 18212118 - 18212154
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  18212118 agcttttaccttatagcttataagctcgtttgacaaa 18212154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 21865244 - 21865280
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  21865244 agcttttagcttatagcttataagctcgtttgacaaa 21865280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 26911510 - 26911546
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||| |||||||||||||||||| |||||||||||||    
T  26911510 agctcttaacttatagcttataagctcgtttgacaaa 26911546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 28382823 - 28382787
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  28382823 agcttttagcttatagcttataagctcgtttgacaaa 28382787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 36712679 - 36712643
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  36712679 agcttttagcttatagcttataagctcgtttgacaaa 36712643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 38579151 - 38579115
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  38579151 agcttttagcttatagcttataagctcgtttgacaaa 38579115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 41322754 - 41322790
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  41322754 agcttttatcttatagcttataagctcgtttgacaaa 41322790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 10856111 - 10856169
Alignment:
Q  227 tgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  10856111 tgtttgggaaaccccaaaaaagagcttttagcttatagcttataagctcgtttgacaaa 10856169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 558336 - 558396
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| |||| |||| |||||||| |||||||||||||| |||||||||||||    
T  558336 gtctgtttgggaaacccaaaaaaa-agcttttagcttatagcttataagctcgtttgacaaa 558396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 3108178 - 3108117
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||| || ||| |||||||||||| || |||||||||||||| |||||||||||||    
T  3108178 gtctgtttggtaacacccagaaaagagcttatagcttatagcttataagctcgtttgacaaa 3108117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 6709867 - 6709806
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaa-cttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| |||| |||||||||||||| ||||||||||||||  ||||||||||||    
T  6709867 gtctgtttgggaaa-ccaaaaaaagagcttttaagcttatagcttataagttcgtttgacaaa 6709806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 34685166 - 34685125
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  34685166 aaaagagcttttagcttatagcttataagctcgtttgacaaa 34685125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 31452132 - 31452086
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||||| || ||||||||||||| ||| |||||||||    
T  31452132 gtctgtttgggaaaacaaaaaaaagagcttttagcttttagcttata 31452086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 2442425 - 2442461
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  2442425 agcttttagcttatagcttataagctcgtttgacaaa 2442461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 31100161 - 31100125
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  31100161 agcttttagcttatagcttataagctcgtttgacaaa 31100125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 31452100 - 31452064
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  31452100 agcttttagcttatagcttataagctcgtttgacaaa 31452064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 32731759 - 32731795
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  32731759 agcttttagcttatagcttataagctcgtttgacaaa 32731795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 34233061 - 34233025
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  34233061 agcttttagcttatagcttataagctcgtttgacaaa 34233025  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 34903960 - 34903996
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  34903960 agcttttagcttatagcttataagctcgtttgacaaa 34903996  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 5998056 - 5997995
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||||||| || | ||| ||||||||| |||||||||||||| |||||||||||||    
T  5998056 gtctgtttgggaaaccccaaaaatgagcttttagcttatagcttataagctcgtttgacaaa 5997995  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 1711372 - 1711326
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||||    
T  1711372 gtctgtttgggaaacccaaaaaaagagcttttagcttatagcttata 1711326  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 9160854 - 9160793
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| ||||| |||| ||||||||||||| ||| || ||||||| |||||||||||||    
T  9160854 gtctgtttaggaaacccaaaaaaagagcttttagcttttaacttataagctcgtttgacaaa 9160793  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 35235889 - 35235828
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||||| ||| || | ||||||||||||| ||| |||||||||| |||||||||||||    
T  35235889 gtctgtttggaaaatcccaaaaaagagcttttagcttttagcttataagctcgtttgacaaa 35235828  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 39246978 - 39246937
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  39246978 aaaagagcttttagcttatagcttataagctcgtttgacaaa 39246937  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 36685816 - 36685852
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  36685816 agcttttaacttatagcttataagctcgtttgacaaa 36685852  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 39275423 - 39275459
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39275423 agcttttaacttatagcttataagctcgtttgacaaa 39275459  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 2236685 - 2236639
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||||||    
T  2236685 gtctgtttgggaaacccaaaaaaagagcttttagcttttagcttata 2236639  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 16474770 - 16474807
Alignment:
Q  248 gagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||| || ||||||||||||||||||||||||||||    
T  16474770 gagcttatagcttatagcttataaactcgtttgacaaa 16474807  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 27130328 - 27130369
Alignment:
Q  244 aaaagagcttttaacttatagcttataaactcgtttgacaaa 285  Q
    ||||||||||||| |||||||||||||| ||| |||||||||    
T  27130328 aaaagagcttttagcttatagcttataagctcttttgacaaa 27130369  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 2236653 - 2236617
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  2236653 agcttttagcttatagcttataagctcgtttgacaaa 2236617  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 2671414 - 2671450
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  2671414 agcttttagcttatagcttataagctcgtttgacaaa 2671450  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 4221610 - 4221574
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  4221610 agcttttagcttatagcttataagctcgtttgacaaa 4221574  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 5591588 - 5591624
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  5591588 agcttttagcttatagcttataagctcgtttgacaaa 5591624  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 12713312 - 12713348
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  12713312 agcttttagcttatagcttataagctcgtttgacaaa 12713348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 12774576 - 12774612
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  12774576 agcttttagcttatagcttataagctcgtttgacaaa 12774612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 13228609 - 13228573
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  13228609 agcttttagcttatagcttataagctcgtttgacaaa 13228573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 14647494 - 14647458
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  14647494 agcttttagcttatagcttataagctcgtttgacaaa 14647458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 19525749 - 19525785
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  19525749 agcttttaccttatagtttataaactcgtttgacaaa 19525785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 24793972 - 24794008
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  24793972 agcttttagcttatagcttataagctcgtttgacaaa 24794008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 30299698 - 30299734
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  30299698 agcttttagcttatagcttataagctcgtttgacaaa 30299734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 30412749 - 30412713
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  30412749 agcttttagcttatagcttataagctcgtttgacaaa 30412713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 39744679 - 39744643
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  39744679 agcttttagcttatagcttataagctcgtttgacaaa 39744643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 12895 - 12849
Alignment:
Q  224 gtctgtttgggaaaaccaagaaaagagcttttaacttatagcttata 270  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||||||    
T  12895 gtctgtttgggaaacccaaaaaaagagcttttagcttttagcttata 12849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 36355 - 36391
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  36355 agcttttagcttatagcttataagctcgtttgacaaa 36391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 22595 - 22631
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  22595 agcttttagcttatagcttataagctcgtttgacaaa 22631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 27281 - 27245
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  27281 agcttttagcttatagcttataagctcgtttgacaaa 27245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 126906 - 126870
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  126906 agcttttagcttatagcttataagctcgtttgacaaa 126870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 41891 - 41855
Alignment:
Q  249 agcttttaacttatagcttataaactcgtttgacaaa 285  Q
    |||||||| |||||||||||||| |||||||||||||    
T  41891 agcttttagcttatagcttataagctcgtttgacaaa 41855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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