View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_2 (Length: 650)
Name: NF8521_low_2
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 109 - 586
Target Start/End: Complemental strand, 32956094 - 32955629
Alignment:
| Q |
109 |
aataatggttgaattgaaattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagcaaacgccgcggttgccacgacagcc |
208 |
Q |
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| T |
32956094 |
aataatggttgaattgaaattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagcgaacgccgcggttgccacgacagct |
32955995 |
T |
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| Q |
209 |
gcgactaacggcggcataatggagtcaggaaacttctacagtaacaacaacaacaa---ttcatggtactcacaaccacagagtcaaatgtatggcaatg |
305 |
Q |
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| T |
32955994 |
gcgactaacggtggcataatggagtcaggaaacttctacagtaacaacaacaacaacaattcatggtactcacaaccacagagtcaaatgtatggcaatg |
32955895 |
T |
|
| Q |
306 |
agctacgtttcatggatgattcagatgcagaatcagaaaatggcattcctaatttcctttcttggagactcaacacaagtcttgttcacgattacacaag |
405 |
Q |
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| T |
32955894 |
agctacgtttcatggatgattcagatgcagaatcagaaaatggcattcctaatttcctttcttggagactcaacacaagtcttgttcacgattacacaag |
32955795 |
T |
|
| Q |
406 |
atgaagcattggaattagaagttacgatgatattgatgatgatgacgacataagcttaatattcctaagataatagaacagaaagaagacaaaaaatgat |
505 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
32955794 |
atgaagcattggaattagaagtt---------------atgatgatgacataagcttaatattcctacgttaatagaacagaaagaagacaaaaaatgat |
32955710 |
T |
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| Q |
506 |
gatgtagatgtaggtgtacgacaatgttttacgatgtagatgtttttgattgtgatggttatgttatggtctcgtcaacgg |
586 |
Q |
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| T |
32955709 |
gatgtagatgtaggtgtacgacaatgttttacgatgtagatgtttttgattgtgatggttatgttatggtctcgtcaacgg |
32955629 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 7723680 - 7723739
Alignment:
| Q |
126 |
aattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagcaa |
185 |
Q |
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|||| |||||| |||||||||| |||||||| |||| ||||||||||||||||||||||| |
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| T |
7723680 |
aattacagtcattatgcaatgcatgtgggatcagattcaagaaggaagagagaagagcaa |
7723739 |
T |
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