View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_low_20 (Length: 342)

Name: NF8521_low_20
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_low_20
NF8521_low_20
[»] chr3 (2 HSPs)
chr3 (10-323)||(17747971-17748285)
chr3 (10-323)||(19049291-19049605)
[»] chr1 (1 HSPs)
chr1 (159-321)||(9846405-9846567)
[»] chr7 (2 HSPs)
chr7 (159-320)||(31861181-31861343)
chr7 (222-321)||(28949618-28949717)
[»] chr2 (3 HSPs)
chr2 (159-298)||(38179862-38180004)
chr2 (165-318)||(29939456-29939611)
chr2 (159-321)||(35711857-35712020)
[»] chr8 (1 HSPs)
chr8 (159-321)||(9321280-9321444)
[»] chr6 (3 HSPs)
chr6 (272-321)||(8039252-8039301)
chr6 (161-196)||(8037795-8037830)
chr6 (159-229)||(11007959-11008029)
[»] chr4 (1 HSPs)
chr4 (261-321)||(24173675-24173735)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 323
Target Start/End: Complemental strand, 17748285 - 17747971
Alignment:
Q  10 gacatcatcacccaaatcttatgtatgctttgataattaaccaattattgacttatgtgctgctcaatgcctagaagaaaaccgtttgtagactttttta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17748285 gacatcatcacccaaatcttatgtatgctttgataattaaccaattattgacttatgtgctgctcaatgcctagaagaaaaccgtttgtagactttttta 17748186  T
Q  110 gacaacttcatgattctgtctgcaacactcaagatcatctcatgatttttaaaacatatctctttcttcttcccacatgaatcccaaacctctctctttc 209  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17748185 gactacttcatgattctgtctgcgacactcaagatcatctcatgatttttaaaacatatctctttcttcttcccacatgaatcccaaacctctctctttc 17748086  T
Q  210 tcatgaactcgccaaaacctgccactctctttcgtctcatt-ttttctcctaaaaagggcatatctcttcttctctcataaatcacaaccctctctattt 308  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17748085 tcatgaactcgccaaaacctgccactctctttcgtctcatttttttctcctaaaaagggcatatctcttcttctctcataaatcacaaccctctctattt 17747986  T
Q  309 cttttggatcctcgt 323  Q
    |||||||||||||||    
T  17747985 cttttggatcctcgt 17747971  T

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Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 323
Target Start/End: Complemental strand, 19049605 - 19049291
Alignment:
Q  10 gacatcatcacccaaatcttatgtatgctttgataattaaccaattattgacttatgtgctgctcaatgcctagaagaaaaccgtttgtagactttttta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19049605 gacatcatcacccaaatcttatgtatgctttgataattaaccaattattgacttatgtgctgctcaatgcctagaagaaaaccgtttgtagactttttta 19049506  T
Q  110 gacaacttcatgattctgtctgcaacactcaagatcatctcatgatttttaaaacatatctctttcttcttcccacatgaatcccaaacctctctctttc 209  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19049505 gactacttcatgattctgtctgcgacactcaagatcatctcatgatttttaaaacatatctctttcttcttcccacatgaatcccaaacctctctctttc 19049406  T
Q  210 tcatgaactcgccaaaacctgccactctctttcgtctcatt-ttttctcctaaaaagggcatatctcttcttctctcataaatcacaaccctctctattt 308  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19049405 tcatgaactcgccaaaacctgccactctctttcgtctcatttttttctcctaaaaagggcatatctcttcttctctcataaatcacaaccctctctattt 19049306  T
Q  309 cttttggatcctcgt 323  Q
    |||||||||||||||    
T  19049305 cttttggatcctcgt 19049291  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 159 - 321
Target Start/End: Original strand, 9846405 - 9846567
Alignment:
Q  159 taaaacatatctctttcttcttcccacatgaatcccaaacctctctctttctcatgaactcgccaaaacctgccactctctttcgtctcattt-tttctc 257  Q
    ||||||||||||||||||||  ||| ||| |||||||| ||||| ||||| |||||||||| ||||||||| |||||||||  ||| |||||| |||||     
T  9846405 taaaacatatctctttcttcagccctcattaatcccaaccctctttctttttcatgaactcaccaaaacct-ccactctctagcgtttcatttgtttctt 9846503  T
Q  258 ctaaaaagggcatatctcttcttctctcataaatcacaaccctctctatttcttttggatcctc 321  Q
     | |||| |  || |||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  9846504 ttgaaaatgcaatctctcttcttctctcatcagtcacaaccctctctatttcttctggatcctc 9846567  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 159 - 320
Target Start/End: Original strand, 31861181 - 31861343
Alignment:
Q  159 taaaacatatctctttcttcttcccacatgaatcccaaacctctctctttctcatgaactcgccaaaacctgccactctctttcgtctcatttttt--ct 256  Q
    ||||||||||||||||||||||||| ||| |||| ||| || ||||||||||||||||||| ||||||||  ||||||||| || |||  ||||||   |    
T  31861181 taaaacatatctctttcttcttccctcataaatctcaaccccctctctttctcatgaactcaccaaaacc-cccactctctatcatcttttttttttctt 31861279  T
Q  257 cctaaaaagggcatatctcttcttctctcataaatcacaaccctctctatttcttttggatcct 320  Q
      |||||||||||||| ||||||| | |||| ||||||||||| || | |||||| ||||||||    
T  31861280 tttaaaaagggcatatatcttcttatgtcatcaatcacaacccactttctttcttctggatcct 31861343  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 321
Target Start/End: Complemental strand, 28949717 - 28949618
Alignment:
Q  222 caaaacctgccactctctttcgtctcatt-ttttctcctaaaaagggcatatctcttcttctctcataaatcacaaccctctctatttcttttggatcct 320  Q
    |||||||| |||||||||||| ||||||| |||||| || |||| | ||| |||||||||||||||| || |||||||||||||||||||| ||||||||    
T  28949717 caaaacct-ccactctctttcatctcattgttttcttctgaaaatgacatctctcttcttctctcatcaaccacaaccctctctatttcttatggatcct 28949619  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 38179862 - 38180004
Alignment:
Q  159 taaaacatatctctttcttcttcccacatgaatcccaaacctctctctttctcatgaactcgccaaaacctgccactctctttcgtctcatttt---ttc 255  Q
    ||||||||||||||||||| ||| | |||||||||||| | ||||||||||||  ||||    |||||| ||| |||||| ||| |||||||||   |||    
T  38179862 taaaacatatctctttctttttcactcatgaatcccaaccatctctctttctcgggaacgaagcaaaacatgctactctccttcatctcatttttttttc 38179961  T
Q  256 tcctaaaaagggcatatctcttcttctctcataaatcacaacc 298  Q
    |||||||||||||||||||| ||||||||||| | ||||||||    
T  38179962 tcctaaaaagggcatatctcgtcttctctcatcactcacaacc 38180004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 318
Target Start/End: Complemental strand, 29939611 - 29939456
Alignment:
Q  165 atatctctttcttcttcccacatgaatcccaaacctctctctttct-catgaactcgccaaaacctgccactctctttcgtctcatttttt---ctccta 260  Q
    ||||||||||||||| ||  |||| ||||||| ||| | | ||||| ||||||||| ||||||||| | |||||||||| |||||||||||   || |||    
T  29939611 atatctctttcttctgccatcatgcatcccaa-cctttttttttcttcatgaactcaccaaaacct-ctactctctttcttctcatttttttttcttcta 29939514  T
Q  261 aaaagggcatatctcttcttctctcataaatcacaaccctctctatttcttttggatc 318  Q
    |||| ||||| |||||||||||||||| | ||| |||||||||| |||||| ||||||    
T  29939513 aaaatggcatctctcttcttctctcatcagtcataaccctctctctttcttctggatc 29939456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 321
Target Start/End: Original strand, 35711857 - 35712020
Alignment:
Q  159 taaaacatatctctttcttcttcccacatgaatcccaaacctctctctttctcatgaactcgccaaaacctgccactctctttcgtctca--ttttttct 256  Q
    |||||||||| | |||||||||||| |||||||| ||| ||  | |||||||||||||||| |||||||||  |||||||| || | | |   ||||| |    
T  35711857 taaaacatatatttttcttcttccctcatgaatctcaaccccttatctttctcatgaactcaccaaaacct-tcactctctgtcattttaatgtttttat 35711955  T
Q  257 cctaaaaagggcatatctcttcttctctcataaatcacaaccctctctatttcttttggatcctc 321  Q
      | |||||||||| | ||| |||||||||| ||||||||| |||||| |||||| | |||||||    
T  35711956 tttgaaaagggcatttatctacttctctcatcaatcacaactctctctctttcttctagatcctc 35712020  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 321
Target Start/End: Complemental strand, 9321444 - 9321280
Alignment:
Q  159 taaaacatatctctttcttcttcccacatgaatcccaaacctc-tctctttctcatgaactcgccaaaacctgccactctctttcgtctcattt---ttt 254  Q
    |||||||||||||||||||| |||  |||||||||||| |||| ||||||||||| |||||| ||||||||| || |||  | || | |  |||   |||    
T  9321444 taaaacatatctctttcttcctccttcatgaatcccaa-cctcatctctttctcacgaactcaccaaaacct-ccgctccttatcattttttttttcttt 9321347  T
Q  255 ctcctaaaaagggcatatctcttcttctctcataaatcacaaccctctctatttcttttggatcctc 321  Q
    || || |||||| ||| | |||||||||||||| | |||||||||||| | |||||| |||||||||    
T  9321346 cttctgaaaaggccatctatcttcttctctcatcagtcacaaccctctatctttcttatggatcctc 9321280  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 8039252 - 8039301
Alignment:
Q  272 tctcttcttctctcataaatcacaaccctctctatttcttttggatcctc 321  Q
    |||||||||||||||||| ||| |||||||||| |||||| |||||||||    
T  8039252 tctcttcttctctcataagtcataaccctctctctttcttctggatcctc 8039301  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 8037795 - 8037830
Alignment:
Q  161 aaacatatctctttcttcttcccacatgaatcccaa 196  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8037795 aaacatatctctttcttcttccctcatgaatcccaa 8037830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 11007959 - 11008029
Alignment:
Q  159 taaaacatatctctttcttcttcccacatgaatcccaaacctctctctttctcatgaactcgccaaaacct 229  Q
    ||||| ||||||||||||||||  | |||||||| ||| |  |||| |||||||||||||| |||||||||    
T  11007959 taaaatatatctctttcttcttttctcatgaatctcaacctcctctttttctcatgaactcaccaaaacct 11008029  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 24173735 - 24173675
Alignment:
Q  261 aaaagggcatatctcttcttctctcataaatcacaaccctctctatttcttttggatcctc 321  Q
    |||| ||||| |||||||||||||||| | ||| |||||| |||||||||| | |||||||    
T  24173735 aaaatggcatctctcttcttctctcatcagtcataaccctatctatttcttctagatcctc 24173675  T

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