View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_21 (Length: 338)
Name: NF8521_low_21
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 32701612 - 32701927
Alignment:
| Q |
19 |
agtatagctcaaatgaaagtatattacctcactattgtccatcattccttttccacaacctaaacaaacatggcaaggttttcgagatttcaaaacaggc |
118 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32701612 |
agtataactcaaatgtaagtatattacctcactattgtccatcattccttttccaccagctaaacaaacatggcaaggttttcgagatttcaaaacaggc |
32701711 |
T |
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| Q |
119 |
acacattgtgttcggttcctcggataaacctttaatgtcggggcagtgaccgcactctgcctaacacattctaagccagatgatggttttgctcttggga |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32701712 |
acacattgtgtttggttcctcggataaacctttaatgtcggggcagtgaccgcactctgcctaacacattctaagccagatgatggttttgctcttggga |
32701811 |
T |
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| Q |
219 |
ttatgaagctgctagagagagggttggcattcattgacaatccaagcggcgtggctgatattttattgtgacataaattgcaggattggttgcagcaact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32701812 |
ttatgaagctgctagagagagggttggcattcattgacaatccaagcggcgtggctgatatttttttgtgacataaattgcaggattggttgcagcaact |
32701911 |
T |
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| Q |
319 |
tgggtgatgtccatct |
334 |
Q |
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|||||||||| ||||| |
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| T |
32701912 |
tgggtgatgttcatct |
32701927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 261
Target Start/End: Original strand, 3957544 - 3957779
Alignment:
| Q |
26 |
ctcaaatgaaagtatattacctcactattgtccatcattccttttccacaacctaaacaaacatggcaaggttttcgagatttcaaaacaggcacacatt |
125 |
Q |
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|||||| | |||| |||||||||||| |||||||||||||||||||||| | ||||||||||||| | ||||||| |||||||||||||||||||| ||| |
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| T |
3957544 |
ctcaaacggaagtgtattacctcactgttgtccatcattccttttccaccagctaaacaaacatgtcgaggtttttgagatttcaaaacaggcacagatt |
3957643 |
T |
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| Q |
126 |
gtgttcggttcctcggataaacctttaatgtcggggcagtgaccgcactctgcctaacacattctaagccagatgatggttttgctcttgggattatgaa |
225 |
Q |
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||||| |||| || ||||||||||||||| ||||||||| ||| |||||||||||||| | |||||||||||| |||||||||||||||||| ||| |
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| T |
3957644 |
gtgttaggttacttggataaacctttaatactggggcagtggtcgcgctctgcctaacacaatataagccagatgaaagttttgctcttgggattaggaa |
3957743 |
T |
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| Q |
226 |
gctgctagagagagggttggcattcattgacaatcc |
261 |
Q |
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| | |||||||||||||||||||||||||||||||| |
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| T |
3957744 |
ggtcctagagagagggttggcattcattgacaatcc |
3957779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 3957803 - 3957855
Alignment:
| Q |
269 |
gtggctgatattttattgtgacataaattgcaggattggttgcagcaacttgg |
321 |
Q |
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|||||||||| ||| | ||||||||||||||||||| |||||||||||||| |
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| T |
3957803 |
gtggctgatagtttttcctgacataaattgcaggattacttgcagcaacttgg |
3957855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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