View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_low_23 (Length: 333)

Name: NF8521_low_23
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_low_23
NF8521_low_23
[»] chr7 (3 HSPs)
chr7 (17-320)||(4859005-4859308)
chr7 (87-172)||(2619453-2619538)
chr7 (87-172)||(43223480-43223565)
[»] scaffold0187 (1 HSPs)
scaffold0187 (85-172)||(27848-27934)
[»] chr1 (1 HSPs)
chr1 (85-172)||(37911143-37911229)
[»] chr3 (2 HSPs)
chr3 (87-172)||(39727078-39727163)
chr3 (87-169)||(4770984-4771066)
[»] chr2 (2 HSPs)
chr2 (105-172)||(27592299-27592366)
chr2 (87-172)||(7457215-7457300)
[»] scaffold0006 (1 HSPs)
scaffold0006 (87-172)||(114994-115079)
[»] chr6 (1 HSPs)
chr6 (87-172)||(693187-693272)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 4859005 - 4859308
Alignment:
Q  17 atataggttatagtgaaggacgatttttgtagatacaggcatattattgactacgcaaaaaaccgctgttggtataggtagtttgtcctatacctatggc 116  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4859005 atataggttatagtgacggacaatttttgtagatacaggcatattattgactacgcaaaaaaccgctgttggtataggtagtttgtcctatacctacggc 4859104  T
Q  117 aaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagtacctcatttctctcatttattccaccaccagaagctctcttgtg 216  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4859105 aaaataacatttacgtacggttttctgctgtcattaaaagttaagtttcttgtactacctcatttctctcatttattccaccaccagaagctctcttgtg 4859204  T
Q  217 ctaccgtgtttcgagacatccttccctacataattctctatgtcacaaaaccaagaacacatacgcattcctctcctcccgatctacaaaaactactcct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4859205 ctaccgtgtttcgagacatccttccctacataattctctatgtcacaaaaccaagaacacatacgcattcctctcctcccgatctacaaaaactactctt 4859304  T
Q  317 tgat 320  Q
    ||||    
T  4859305 tgat 4859308  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 2619538 - 2619453
Alignment:
Q  87 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 172  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| |||||||||  ||||||| |||| |||||||||||||||||    
T  2619538 ggtataggtaatttggcatatacctacggtaaaaggatatttacctacggtttttggctgtcactaaatgtcaagtttcttgtagt 2619453  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 43223480 - 43223565
Alignment:
Q  87 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 172  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| || ||||||| ||||||| |||| || ||||||||||||||    
T  43223480 ggtataggtaatttggcatatacctacggtaaaaggatatttacctatggttttcggctgtcactaaatgtgaagtttcttgtagt 43223565  T

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Target: scaffold0187 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 27848 - 27934
Alignment:
Q  85 ttggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 172  Q
    |||||||||||| |||| |||||||||||||| | |  |||||||| |||||||||  ||||||| |||| ||| |||||||||||||    
T  27848 ttggtataggtattttggcctatacctatggctagaagacatttacctacggtttttggctgtcactaaatgtc-agtttcttgtagt 27934  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 37911229 - 37911143
Alignment:
Q  85 ttggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 172  Q
    |||||||||||| |||| |||||||||||||| | |  |||||||| |||||||||  ||||||| |||| ||| |||||||||||||    
T  37911229 ttggtataggtattttggcctatacctatggctagaagacatttacctacggtttttggctgtcactaaatgtc-agtttcttgtagt 37911143  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 39727078 - 39727163
Alignment:
Q  87 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 172  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| || ||||||| ||||||| |||| |||||||||||||||||    
T  39727078 ggtataggtaatttggcatatacctacggtaaaaggatatttacctatggttttcggctgtcactaaatgtcaagtttcttgtagt 39727163  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 4770984 - 4771066
Alignment:
Q  87 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgt 169  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| |||||||||  ||||||| |||| ||||||||||||||    
T  4770984 ggtataggtaatttggcatatacctacggtaaaaggatatttacctacggtttttggctgtcactaaatgtcaagtttcttgt 4771066  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 27592366 - 27592299
Alignment:
Q  105 tatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 172  Q
    |||||||| || |||| ||||| ||| || ||||||| ||||||| |||||| |||||||||||||||    
T  27592366 tatacctacggtaaaagaacatctacctatggttttcggctgtcactaaaaggcaagtttcttgtagt 27592299  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 7457215 - 7457300
Alignment:
Q  87 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 172  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| || ||||||  ||||||| |||| |||||||||||||||||    
T  7457215 ggtataggtaatttggcatatacctacggtaaaaggatatttacctatggtttttggctgtcactaaatgtcaagtttcttgtagt 7457300  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 114994 - 115079
Alignment:
Q  87 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 172  Q
    |||||||||| |||| | || ||||| || ||||  | |||||| || ||||||| ||||||| |||| |||||||||||||||||    
T  114994 ggtataggtaatttggcatacacctacggtaaaaggatatttacctatggttttcggctgtcactaaatgtcaagtttcttgtagt 115079  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 693272 - 693187
Alignment:
Q  87 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 172  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| || ||||||| ||||||| | || |||||||||||||||||    
T  693272 ggtataggtaatttggcatatacctacggtaaaaggatatttacctatggttttcggctgtcactgaatgtcaagtttcttgtagt 693187  T

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