View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_25 (Length: 327)
Name: NF8521_low_25
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 26811909 - 26812224
Alignment:
| Q |
1 |
ttgacgattcatttcatccttaaattttaaaaaggaaagatatgtttttacagttttctttcatgtttagaaagattgttcattgtacgttgaaacaatt |
100 |
Q |
| |
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||||| |||||||| | |||||||| ||||||||||||||||| |||||| ||||| |||||| |||||||||||||||| ||||| |||||||||||| |
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| T |
26811909 |
ttgacaattcattttagccttaaatgttaaaaaggaaagatatctttttagggttttatttcatctttagaaagattgttctttgtatgttgaaacaatt |
26812008 |
T |
|
| Q |
101 |
tgaattgtaatatcacatcatcacaatatatgggtgtaattgtgattctgatgcatttactcaaacttgtctgattgggcgcaggaaagatgcatatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26812009 |
tgaattgtaatatcacatcatcacaatatatgggtgtaattgtgattctgatgcatttactcaaacttgtctgattgggcgcaggaaagatgcatatgaa |
26812108 |
T |
|
| Q |
201 |
tatgagtttattaaagagatagttacagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcgac |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26812109 |
tatgagtttattaagaagatagttacagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctattgtgggacttgagtctcgac |
26812208 |
T |
|
| Q |
301 |
tgttgcatgtgatgtc |
316 |
Q |
| |
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|| ||||||| ||||| |
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| T |
26812209 |
tgctgcatgtaatgtc |
26812224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 26618020 - 26618322
Alignment:
| Q |
1 |
ttgacgattcatttcatccttaaattttaaaaaggaaagatatgtttttacagttttctttcatgtttagaaagattgttcattgtacgttgaaacaatt |
100 |
Q |
| |
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||||| |||||||| | |||| || |||||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||| | ||||||| |||| |
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| T |
26618020 |
ttgacaattcattttacacttacatgttaaaaaggaaatatatgttttttgagttttctttcatgtttagaaagtttgttctttgcatgttgaaaaaatt |
26618119 |
T |
|
| Q |
101 |
tgaattgtaatatca-catcatcacaatatatgggtgtaattgtgattctgatgcatttactcaaacttgtctgattgggcgcaggaaagatgcatatga |
199 |
Q |
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|| || |||||||| ||||||| ||||| |||| ||| |||| |||||||||| ||||||| ||||||||||| ||||||||||| |||||| |||||| |
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| T |
26618120 |
tgtatcataatatcatcatcatcgcaatacatggctgtgattgagattctgatgtatttacttaaacttgtctggttgggcgcagggaagatgaatatga |
26618219 |
T |
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| Q |
200 |
atatgagtttattaaagagatagttacagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcga |
299 |
Q |
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||| ||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||| |
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| T |
26618220 |
atacgagtttattaagaagatagttacagagatttggaacaagatcaattgtggtcttttagaagttgctgatcacctagttgttggacttgactctcga |
26618319 |
T |
|
| Q |
300 |
ctg |
302 |
Q |
| |
|
||| |
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|
| T |
26618320 |
ctg |
26618322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 26723948 - 26724250
Alignment:
| Q |
1 |
ttgacgattcatttcatccttaaattttaaaaaggaaagatatgtttttacagttttctttcatgtttagaaagattgttcattgtacgttgaaacaatt |
100 |
Q |
| |
|
||||| |||||||| | |||| || |||||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||| | ||||||| |||| |
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| T |
26723948 |
ttgacaattcattttacacttacatgttaaaaaggaaatatatgttttttgagttttctttcatgtttagaaagtttgttctttgcatgttgaaaaaatt |
26724047 |
T |
|
| Q |
101 |
tgaattgtaatatca-catcatcacaatatatgggtgtaattgtgattctgatgcatttactcaaacttgtctgattgggcgcaggaaagatgcatatga |
199 |
Q |
| |
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|| || |||||||| ||||||| ||||| |||| ||| |||| |||||||||| ||||||| ||||||||||| ||||||||||| |||||| |||||| |
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| T |
26724048 |
tgtatcataatatcatcatcatcgcaatacatggctgtgattgagattctgatgtatttacttaaacttgtctggttgggcgcagggaagatgaatatga |
26724147 |
T |
|
| Q |
200 |
atatgagtttattaaagagatagttacagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcga |
299 |
Q |
| |
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||| ||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||| |
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| T |
26724148 |
atacgagtttattaagaagatagttacagagatttggaacaagatcaattgtggtcttttagaagttgctgatcacctagttgttggacttgactctcga |
26724247 |
T |
|
| Q |
300 |
ctg |
302 |
Q |
| |
|
||| |
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|
| T |
26724248 |
ctg |
26724250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 26136432 - 26136553
Alignment:
| Q |
161 |
tcaaacttgtctgattgggcgcaggaaagatgcatatgaatatgagtttattaaagagatagttacagagatttccaaaaagatcaaccgtggtctttta |
260 |
Q |
| |
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|||||||| |||| |||||||||||||||| | ||| ||||||||||||||||| |||||||||||| |||||| || ||||||||||||| ||||||| |
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| T |
26136432 |
tcaaacttatctggttgggcgcaggaaagaagaatacgaatatgagtttattaagaagatagttacagtgatttcaaacaagatcaaccgtgttctttta |
26136531 |
T |
|
| Q |
261 |
gaagttgctgatcaccctgttg |
282 |
Q |
| |
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| ||||| |||||||| |||| |
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| T |
26136532 |
catgttgccgatcaccccgttg |
26136553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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