View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_28 (Length: 313)
Name: NF8521_low_28
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 2201330 - 2201029
Alignment:
| Q |
1 |
cttaataaagtgtgaattgagagcctgcatatannnnnnnatcaaatataaggaactttgttaataaaacaggtaagtttttcgcataaattggtgaact |
100 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2201330 |
cttaataaagtgtgaattgagagcctgcatttttttttttatcaaatataaggaactttgttaataaaacaggtaagtttttcgcataaattagtgaact |
2201231 |
T |
|
| Q |
101 |
tgggtgaaagttaacaaaaaatgccatattgacaaaaatgttgcaacttttctaacaacatcaaagtgtaaaatctcatgtacagtaggtttggaaacca |
200 |
Q |
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| T |
2201230 |
tgggtgaaagttagcaaaaaatgccatattgacaaaaatgttgcaacttttctaacaacatcaaagtgtaaaatctcatgtacagtaggtttggaaacca |
2201131 |
T |
|
| Q |
201 |
aaactcaattgcagttaagttaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcgtataaaggaacacaatgatgtcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2201130 |
aaactcaattgcagttaagttaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcgtataaaggaacacaatgaagtcc |
2201031 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
|
|| |
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|
| T |
2201030 |
at |
2201029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 44 - 302
Target Start/End: Complemental strand, 2213965 - 2213705
Alignment:
| Q |
44 |
aaatataaggaactttgttaataaaacaggtaagtttttcgcataaattggtgaacttgggtgaaagttaacaaaaaatgccatattgacaaaaatgttg |
143 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||| |
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| T |
2213965 |
aaatataaggaactttgttaatagtacaggtaagtttttcgcataaattggtgagcttgggtgaaagtcagcaaaaaatgccatattgacaaaaacgttg |
2213866 |
T |
|
| Q |
144 |
caacttttctaacaacatcaaagtgtaaaatctcatgtacagtaggtttggaaaccaaaactcaattgc--agttaagttaaagcaccatcactgtgtac |
241 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | | | |||||||||||||||||||| |
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| T |
2213865 |
caacttttctaataacatcaaagtgtaaaatctcatgtacaacaggtttggaaaccaaaattcaattgctaattgcggacaaagcaccatcactgtgtac |
2213766 |
T |
|
| Q |
242 |
aaacatgctaaacgtttacacatacctaaggtatcgtataaaggaacacaatgatgtccat |
302 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
2213765 |
aaacatgctaaacgtttacacatacctaaggtatcatataaaggaacacaatgaagtccat |
2213705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 41932140 - 41932180
Alignment:
| Q |
262 |
catacctaaggtatcgtataaaggaacacaatgatgtccat |
302 |
Q |
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| T |
41932140 |
catacctaaggtatcatataaaggaacacaataaagtccat |
41932180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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