View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_3 (Length: 538)
Name: NF8521_low_3
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_3 |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 205 - 523
Target Start/End: Complemental strand, 11878129 - 11877813
Alignment:
| Q |
205 |
aagccatgtgacttctcaataatgagattaacatgtgagatataatgttgtcaacaatgcccggaaaaagtgcaataatgagattaacattgcagctttt |
304 |
Q |
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| T |
11878129 |
aagccatgtgacttctcaataatgagattaacatgtgagatataatgttgtcaacaatgcccggaaaaagtgcaataatgagattaacattgcagctttt |
11878030 |
T |
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| Q |
305 |
gatggagaaaagtatatataaaactataactaagaaatgtttttgaaagaaatatgcagattttaagattagttttaaaaataatcattcgagtttttct |
404 |
Q |
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| T |
11878029 |
gatggagaaaagtatatataaaactatatctaagaaatgtttttgaaagaaatatgcagattttaagattagttttaaaaataattattcgagtttttct |
11877930 |
T |
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| Q |
405 |
tatcttgaaattttgttggaatgtgcttatattttacgaagatcaaatttgcatatcttgaaatatgcaaannnnnnnnnnnntaacaccaggaaaagtg |
504 |
Q |
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| T |
11877929 |
tatcttgaaattttgttggaatgtgcttatattttacgaagatcaaatttgcatatcttgaaatatgcaaa--atatatatattaacaccaggaaaagtg |
11877832 |
T |
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| Q |
505 |
tttttccaaagagtctttt |
523 |
Q |
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| T |
11877831 |
tttttccaaagagtctttt |
11877813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 11878297 - 11878183
Alignment:
| Q |
38 |
ttatacaacttaattatgtaaatgtatataatgtatgaactggtgcgggcaatatgtggggggaagaagacagaatgaggaattattactatgccaatag |
137 |
Q |
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| T |
11878297 |
ttatacaacttaattatgtaaatgtatataatgtatgaactggtgtgggcaatatgtggggggaagaagacagaatgaggagttattactatgccaatag |
11878198 |
T |
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| Q |
138 |
tgcaagttcaacacc |
152 |
Q |
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| T |
11878197 |
tggaagttcatcacc |
11878183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18988997 - 18988953
Alignment:
| Q |
1 |
gatcccaaaaaggcagaaaccctaatcccccacatttttatacaa |
45 |
Q |
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| T |
18988997 |
gatcccaaaaaggcagaaaccctaatcccccacatttttttacaa |
18988953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 15441 - 15397
Alignment:
| Q |
2 |
atcccaaaaaggcagaaaccctaatcccccacatttttatacaac |
46 |
Q |
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| T |
15441 |
atcccaaaaaggcagaaaccctattcccgcacatttctttacaac |
15397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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