View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_31 (Length: 289)
Name: NF8521_low_31
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 52376759 - 52376488
Alignment:
| Q |
1 |
caccaacaacagatggttcatccaataaatcaccacaacaagcaccaacaaatgcaccatcaaacgaaccaagcaaaacacctgaatctgcacccacaaa |
100 |
Q |
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| T |
52376759 |
caccaacagcagatggttcatccaataaatcaccacaacaagcaccaacaaatgcaccatcaaacgaaccaagcaaaacacctgaatctgcacccacaaa |
52376660 |
T |
|
| Q |
101 |
tgcacccacagcagcatccaccaacgcgcctgcagaggcaccaaaaggcaatggcgagaatgtagccggtagttctaaagcacctggaagtgctccaatt |
200 |
Q |
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| T |
52376659 |
tgcacccacagcagcatccaccaacgcgcctgcagaggcaccaaaaggcaatggcgcgaatgtagccggtagttctaaagcacctgaaagtgctccaatt |
52376560 |
T |
|
| Q |
201 |
gtgtcgccagccggagcacctcaaggggatctaacagacgatgatgatgacgatgatcaaatggttgcacct |
272 |
Q |
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||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52376559 |
gtgtctccaaccggagcacctcaaggggatctaacagatgatgatgatgacgatgatcaaatggttgcacct |
52376488 |
T |
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