View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_32 (Length: 273)
Name: NF8521_low_32
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_32 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 44964842 - 44965114
Alignment:
| Q |
1 |
ataggtgctcttgcaccaataacgtagcattctattctaggacatcaatttgatcctttgcatgcggataacaacatagcatatgtgatacattcaatac |
100 |
Q |
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| T |
44964842 |
ataggtgctcttgaaccaataacgtagcattctattctaggacatcaatttgatcctttgcatgcggataacaacatagcatatgtgatacattcaatac |
44964941 |
T |
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| Q |
101 |
attacaacacaacatatttttctttcatgttgcactatcccatactccaaacaatgctacttttaatttagcttcattgttgccaaatccacatctatac |
200 |
Q |
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| T |
44964942 |
attacaacacaacatatttttctttcatgttgcactatcccatactccaaacaatgctacttttaatttagcttcattgttgccaaatccacatctatac |
44965041 |
T |
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| Q |
201 |
agacatgggtcacaaagaaaaatcacgaaaagataagagattgcaagaaatatcccttttgagaaccattcct |
273 |
Q |
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| T |
44965042 |
agacatgggtcacaaagaaaaatcacgaaaagataagagattgcaagaaatatcccttttgagaaccattcct |
44965114 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 40068400 - 40068445
Alignment:
| Q |
228 |
aaaagataagagattgcaagaaatatcccttttgagaaccattcct |
273 |
Q |
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| T |
40068400 |
aaaagataagagatcgcaagaaatatcgcttttgaggaccattcct |
40068445 |
T |
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