View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_33 (Length: 261)
Name: NF8521_low_33
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_33 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 14901543 - 14901798
Alignment:
| Q |
1 |
aggcctagccatcctaaagcagcacagattgctaggaagttgagaataaagattaagaacccttgatactttgttcaaatgatgaactctttttaagttg |
100 |
Q |
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| T |
14901543 |
aggcctagccatcctaaagcagcacagattgctcggaagttgagaataaagattaagaacccttgatacgttgttcaaatgat-------ttttaagttg |
14901635 |
T |
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| Q |
101 |
agtgtgtattgtgtttggaataacagttgtgagaaatcaatcatagtaaatgtcattagcttaaatgtcacgagccactttgagttttttatagttgatt |
200 |
Q |
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| T |
14901636 |
agtgtgtattgtgtttggaataacagttgtgagaaatcaatcatagtaaatgtcattagcttaaatgtcacgagccactttgagtttttcatagttgatt |
14901735 |
T |
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| Q |
201 |
ttatttgtattattcaactc--atgtattatttggttagaattgaactaatatcagtcatatt |
261 |
Q |
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| T |
14901736 |
ttatttgtattattcaactcaaatgtattatttggttaggattgaactaatatcagtgatatt |
14901798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 14908306 - 14908442
Alignment:
| Q |
1 |
aggcctagccatcctaaagcagcacagattgctaggaagttgagaataaagattaagaacccttgatactttgttcaa---atgatgaactctttttaag |
97 |
Q |
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| T |
14908306 |
aggcctagccatcctaaagcagcacagattgctcggaagttaagaataaaggttaagaacccttgatactttgttcaaacgatgatgaactattttcaac |
14908405 |
T |
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| Q |
98 |
ttgagtgtgtattgtgtttggaataacagttgtgaga |
134 |
Q |
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| T |
14908406 |
ttgagtgtgtattgtgtttggaataatagttgtgaga |
14908442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 14912933 - 14913014
Alignment:
| Q |
141 |
tcatagtaaatgtcattagcttaaatgtcacgagccactttgagttttttatagttgattttatttgtattattcaactcat |
222 |
Q |
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| T |
14912933 |
tcatagtaaatgtcagtagcttgaatgtcacgagccactttgagttttttatagttgatttcatttgaattattcaattcat |
14913014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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