View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_low_35 (Length: 256)

Name: NF8521_low_35
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_low_35
NF8521_low_35
[»] chr8 (10 HSPs)
chr8 (1-208)||(44688550-44688757)
chr8 (125-201)||(13170573-13170649)
chr8 (202-252)||(6573156-6573206)
chr8 (202-252)||(20083738-20083788)
chr8 (202-252)||(37292607-37292657)
chr8 (202-252)||(5082312-5082362)
chr8 (202-252)||(6202678-6202728)
chr8 (202-252)||(19140667-19140717)
chr8 (202-252)||(20178629-20178680)
chr8 (204-252)||(42818009-42818057)
[»] chr1 (5 HSPs)
chr1 (5-208)||(18991345-18991545)
chr1 (202-252)||(19676613-19676663)
chr1 (203-252)||(21046150-21046199)
chr1 (205-252)||(16058416-16058463)
chr1 (202-252)||(42912951-42913001)
[»] chr3 (18 HSPs)
chr3 (8-208)||(41985772-41985972)
chr3 (202-252)||(10311429-10311479)
chr3 (202-252)||(17044868-17044918)
chr3 (202-252)||(17518973-17519023)
chr3 (202-252)||(17533835-17533885)
chr3 (202-252)||(22306683-22306733)
chr3 (202-252)||(40807898-40807948)
chr3 (202-252)||(41172471-41172521)
chr3 (202-252)||(49900632-49900682)
chr3 (204-252)||(44274320-44274368)
chr3 (210-252)||(5200278-5200320)
chr3 (202-252)||(10563610-10563660)
chr3 (210-252)||(15931615-15931657)
chr3 (202-252)||(40812735-40812785)
chr3 (202-252)||(50348126-50348176)
chr3 (203-252)||(17047028-17047077)
chr3 (203-252)||(35064681-35064730)
chr3 (145-201)||(41981005-41981061)
[»] chr7 (11 HSPs)
chr7 (202-252)||(10277229-10277279)
chr7 (202-252)||(12372176-12372226)
chr7 (202-252)||(12127263-12127313)
chr7 (202-252)||(12465360-12465410)
chr7 (202-252)||(20620188-20620238)
chr7 (202-252)||(32433689-32433739)
chr7 (203-252)||(14180499-14180548)
chr7 (203-252)||(20214049-20214098)
chr7 (214-252)||(11067370-11067408)
chr7 (202-252)||(13147572-13147622)
chr7 (202-252)||(46386188-46386238)
[»] chr6 (5 HSPs)
chr6 (202-256)||(27330081-27330135)
chr6 (202-256)||(27390821-27390875)
chr6 (202-252)||(15890812-15890862)
chr6 (202-252)||(7827874-7827924)
chr6 (202-252)||(23150387-23150437)
[»] chr4 (10 HSPs)
chr4 (202-252)||(6633637-6633687)
chr4 (202-252)||(16998427-16998477)
chr4 (202-252)||(37019572-37019622)
chr4 (202-252)||(46001631-46001681)
chr4 (202-252)||(53630574-53630624)
chr4 (202-252)||(25091555-25091605)
chr4 (202-252)||(10356536-10356586)
chr4 (202-252)||(11425845-11425895)
chr4 (202-252)||(42875699-42875749)
chr4 (204-252)||(15115124-15115172)
[»] chr2 (10 HSPs)
chr2 (202-252)||(17307388-17307438)
chr2 (212-252)||(2523857-2523897)
chr2 (202-252)||(5031229-5031279)
chr2 (202-252)||(24516088-24516138)
chr2 (202-252)||(24780940-24780990)
chr2 (202-252)||(40912222-40912272)
chr2 (203-252)||(27484578-27484627)
chr2 (202-252)||(19201300-19201350)
chr2 (202-252)||(22251548-22251598)
chr2 (202-252)||(36841166-36841216)
[»] scaffold0020 (1 HSPs)
scaffold0020 (203-252)||(143513-143562)
[»] scaffold1941 (1 HSPs)
scaffold1941 (202-252)||(40-90)
[»] scaffold1633 (1 HSPs)
scaffold1633 (202-252)||(1107-1157)
[»] scaffold0737 (1 HSPs)
scaffold0737 (202-252)||(4814-4864)
[»] scaffold0632 (1 HSPs)
scaffold0632 (202-252)||(1067-1117)
[»] scaffold0334 (1 HSPs)
scaffold0334 (202-252)||(420-470)
[»] scaffold0241 (2 HSPs)
scaffold0241 (202-252)||(2466-2516)
scaffold0241 (202-252)||(3084-3134)
[»] scaffold0111 (1 HSPs)
scaffold0111 (202-252)||(12633-12683)
[»] scaffold0077 (1 HSPs)
scaffold0077 (202-252)||(34241-34291)
[»] scaffold0064 (1 HSPs)
scaffold0064 (202-252)||(58648-58698)
[»] scaffold0001 (2 HSPs)
scaffold0001 (202-252)||(31896-31946)
scaffold0001 (202-252)||(37203-37253)
[»] chr5 (2 HSPs)
chr5 (202-252)||(7484904-7484954)
chr5 (202-252)||(20566456-20566506)
[»] scaffold0407 (1 HSPs)
scaffold0407 (203-252)||(11375-11424)
[»] scaffold1283 (1 HSPs)
scaffold1283 (202-252)||(568-618)
[»] scaffold0004 (1 HSPs)
scaffold0004 (202-252)||(72846-72896)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 44688550 - 44688757
Alignment:
Q  1 ccccgcatgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatggagcagcggact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44688550 ccccgcatgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatggagcagcggact 44688649  T
Q  101 ttagtgtgcaataagtggctaaacatgttgatggaggggacataaaattcctggtagagagtggaggtgagttgttgctagtgaacatctatgactctca 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  44688650 ttagtgtgcaacaagtggctaaacatgttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctca 44688749  T
Q  201 tggttttg 208  Q
    ||||||||    
T  44688750 tggttttg 44688757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 13170573 - 13170649
Alignment:
Q  125 atgttgatggaggggacataaaattcctggtagagagtggaggtgagttgttgctagtgaacatctatgactctcat 201  Q
    |||| |||||||||||||| |||||| |||| ||||| |  |||||||||||||||||| ||||||||||| |||||    
T  13170573 atgtggatggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcat 13170649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 6573156 - 6573206
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  6573156 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 6573206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 20083738 - 20083788
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  20083738 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 20083788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 37292657 - 37292607
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  37292657 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 37292607  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 5082312 - 5082362
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  5082312 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 5082362  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 6202728 - 6202678
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  6202728 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 6202678  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 19140717 - 19140667
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  19140717 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 19140667  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 20178629 - 20178680
Alignment:
Q  202 ggttttgtagttgtaa-ttggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||| |||||| |||||||| |||||||||||||||||||    
T  20178629 ggttttgaagttgtaaattggttgttaatagagtagaaaattcgttgaattt 20178680  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 42818009 - 42818057
Alignment:
Q  204 ttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||| |||||||||||||| |||||| | |||||||| ||||||||||    
T  42818009 ttttgaagttgtaattggttgttaataaagtagaaaatccgttgaattt 42818057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 18991545 - 18991345
Alignment:
Q  5 gcatgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatggagcagcggactttag 104  Q
    ||||||||||  ||||| ||||||| || || |||||||||| |||||||   || |||||||||||| ||||| |||| | ||||     ||||| |||    
T  18991545 gcatgtcaacgtactttctagacatctgcgtgtttaaagagcggttttatgcggttaataaaattggtaggacagttgcgtttggatt---ggactatag 18991449  T
Q  105 tgtgcaataagtggctaaacatgttgatggaggggacataaaattcctggtagagagtggaggtgagttgttgctagtgaacatctatgactctcatggt 204  Q
    |||  | | ||||||| || ||||  |||||||||| || |||||| |||||||| ||| ||||||||||||||||||| |||||| |||||| ||| ||    
T  18991448 tgttgagttagtggctgaatatgtgaatggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgt 18991349  T
Q  205 tttg 208  Q
    ||||    
T  18991348 tttg 18991345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 19676663 - 19676613
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  19676663 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 19676613  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 21046150 - 21046199
Alignment:
Q  203 gttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  21046150 gttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 21046199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 16058416 - 16058463
Alignment:
Q  205 tttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  16058416 tttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 16058463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 42913001 - 42912951
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||  |||||||||    
T  42913001 ggttttgaagttgtaattggttgttaatagagtagaaaatctgttgaattt 42912951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 41985972 - 41985772
Alignment:
Q  8 tgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatggagcagcggactttagtgt 107  Q
    |||||||  ||||| ||||||| || || |||||||| | ||||| |  ||| |||||||||||  ||||| |||||| |||| |   ||||| ||||||    
T  41985972 tgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggacc---ggactatagtgt 41985876  T
Q  108 gcaataagtggctaaacatgttgatggaggggacataaaattcctggtagagagtggaggtg---agttgttgctagtgaacatctatgactctcatggt 204  Q
      | | | ||||| || |||| |||||||||||||| |||||||||||||||||||  ||||   |||||||||||||  |||| |||||||||||| ||    
T  41985875 cgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgt 41985776  T
Q  205 tttg 208  Q
    ||||    
T  41985775 tttg 41985772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 10311479 - 10311429
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  10311479 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 10311429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 17044918 - 17044868
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||| |||||||||    
T  17044918 ggttttgaagttgtaattggttgttaatagagtagaaaatttgttgaattt 17044868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 17518973 - 17519023
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  17518973 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 17519023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 17533835 - 17533885
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  17533835 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 17533885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 22306683 - 22306733
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  22306683 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 22306733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 40807948 - 40807898
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  40807948 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 40807898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 41172471 - 41172521
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||| |||||||||    
T  41172471 ggttttgaagttgtaattggttgttaatagagtagaaaatttgttgaattt 41172521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 49900682 - 49900632
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  49900682 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 49900632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 44274368 - 44274320
Alignment:
Q  204 ttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||| |||||||||||||| |||||||| |||||||||| ||||||||    
T  44274368 ttttgaagttgtaattggttgttaatagagtagaaaattcattgaattt 44274320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 5200278 - 5200320
Alignment:
Q  210 agttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||||||||||| |||||||| |||||||| ||||||||||    
T  5200278 agttgtaattggttgttaatagagtagaaaatccgttgaattt 5200320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 10563660 - 10563610
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||  ||||||||||    
T  10563660 ggttttgaagttgtaattggttgttaatagagtagaaaagccgttgaattt 10563610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 15931615 - 15931657
Alignment:
Q  210 agttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||||||  ||||||||||| |||||||||||||||||||    
T  15931615 agttgtaattaattattaatagagtagaaaattcgttgaattt 15931657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 40812785 - 40812735
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| ||||||||||| || |||||||| |||||||| ||||||||||    
T  40812785 ggttttgaagttgtaattgattgttaatagagtagaaaatccgttgaattt 40812735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 50348126 - 50348176
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||  |||||||||    
T  50348126 ggttttgaagttgtaattggttgttaatagagtagaaaatctgttgaattt 50348176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 17047077 - 17047028
Alignment:
Q  203 gttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||| |||||||||||||| |||||||| || ||||| ||||||||||    
T  17047077 gttttgaagttgtaattggttgttaatagagtaaaaaatccgttgaattt 17047028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 35064681 - 35064730
Alignment:
Q  203 gttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||| |||||||||||||| |||||| | |||||||| ||||||||||    
T  35064681 gttttgaagttgtaattggttgttaatatagtagaaaatccgttgaattt 35064730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 41981061 - 41981005
Alignment:
Q  145 aaattcctggtagagagtggaggtgagttgttgctagtgaacatctatgactctcat 201  Q
    |||||||||||||||||||  ||||| || ||||||||| |||| ||| ||||||||    
T  41981061 aaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcat 41981005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 10277279 - 10277229
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  10277279 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 10277229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 12372226 - 12372176
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  12372226 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 12372176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 12127263 - 12127313
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||| ||| |||||||||||||||||||    
T  12127263 ggttttgaagttgtaattggttgttaagagagtagaaaattcgttgaattt 12127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 12465360 - 12465410
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  12465360 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 12465410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 20620238 - 20620188
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  20620238 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 20620188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 32433689 - 32433739
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||| |||||||||    
T  32433689 ggttttgaagttgtaattggttgttaatagagtagaaaattagttgaattt 32433739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 14180499 - 14180548
Alignment:
Q  203 gttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  14180499 gttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 14180548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 20214098 - 20214049
Alignment:
Q  203 gttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  20214098 gttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 20214049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 11067408 - 11067370
Alignment:
Q  214 gtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  11067408 gtaattggttgttaatagagtagaaaattcgttgaattt 11067370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 13147572 - 13147622
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||| | |||||||| ||||||||||    
T  13147572 ggttttgaagttgtaattggttgttaataaagtagaaaatccgttgaattt 13147622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 46386188 - 46386238
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||| | ||||||||||    
T  46386188 ggttttgaagttgtaattggttgttaatagagtagaaattccgttgaattt 46386238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 27330081 - 27330135
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaatttatgt 256  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||    
T  27330081 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaatttatgt 27330135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 27390821 - 27390875
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaatttatgt 256  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||    
T  27390821 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaatttatgt 27390875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 15890812 - 15890862
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  15890812 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 15890862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 7827924 - 7827874
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||  |||||||||    
T  7827924 ggttttgaagttgtaattggttgttaatagagtagaaaatcggttgaattt 7827874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 23150387 - 23150437
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| || |||||| |||||||||    
T  23150387 ggttttgaagttgtaattggttgttaatagagtataaaatttgttgaattt 23150437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 6633637 - 6633687
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  6633637 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 6633687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 16998477 - 16998427
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  16998477 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 16998427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 37019622 - 37019572
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  37019622 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 37019572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 46001631 - 46001681
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  46001631 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 46001681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 53630574 - 53630624
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  53630574 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 53630624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 25091605 - 25091555
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  25091605 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 25091555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 10356536 - 10356586
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||  |||||||| |||||||| ||||||||||    
T  10356536 ggttttgaagttgtaattggtagttaatagagtagaaaatccgttgaattt 10356586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 11425895 - 11425845
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| | |||||||||||| |||||||| |||||||| ||||||||||    
T  11425895 ggttttgaaattgtaattggttgttaatagagtagaaaatccgttgaattt 11425845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 42875749 - 42875699
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| ||||||||||| || |||||||| |||||||| ||||||||||    
T  42875749 ggttttgaagttgtaattgattgttaatagagtagaaaatccgttgaattt 42875699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 15115172 - 15115124
Alignment:
Q  204 ttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||| |||||||||||||| |||||||| ||||||||  |||||||||    
T  15115172 ttttgaagttgtaattggttgttaatagagtagaaaatctgttgaattt 15115124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 17307438 - 17307388
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  17307438 ggttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 17307388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 2523857 - 2523897
Alignment:
Q  212 ttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  2523857 ttgtaattggttattaatagagtagaaaattcgttgaattt 2523897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 5031229 - 5031279
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| || ||||||||||||||||    
T  5031229 ggttttgaagttgtaattggttgttaatagagtataaaattcgttgaattt 5031279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 24516138 - 24516088
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  24516138 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 24516088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 24780940 - 24780990
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  24780940 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 24780990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 40912272 - 40912222
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| ||||||| |||||| |||||||| |||||||||||||||||||    
T  40912272 ggttttgaagttgtagttggttgttaatagagtagaaaattcgttgaattt 40912222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 27484578 - 27484627
Alignment:
Q  203 gttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  27484578 gttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 27484627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 19201300 - 19201350
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||  |||||||||    
T  19201300 ggttttgaagttgtaattggttgttaatagagtagaaaatctgttgaattt 19201350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 22251548 - 22251598
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||  |||||||||    
T  22251548 ggttttgaagttgtaattggttgttaatagagtagaaaatctgttgaattt 22251598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 36841216 - 36841166
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||  |||||||||    
T  36841216 ggttttgaagttgtaattggttgttaatagagtagaaaatatgttgaattt 36841166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 143562 - 143513
Alignment:
Q  203 gttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  143562 gttttgaagttgtaattggttgttaatagagtagaaaattcgttgaattt 143513  T

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Target: scaffold1941 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1941
Description:

Target: scaffold1941; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 90 - 40
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  90 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 40  T

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Target: scaffold1633 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1633
Description:

Target: scaffold1633; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 1157 - 1107
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  1157 ggttttgaagttgtaattggttgttaatagaatagaaaatccgttgaattt 1107  T

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Target: scaffold0737 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 4814 - 4864
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  4814 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 4864  T

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Target: scaffold0632 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 1117 - 1067
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  1117 ggttttgaagttgtaattggttgttaatagaatagaaaatccgttgaattt 1067  T

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Target: scaffold0334 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 470 - 420
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  470 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 420  T

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Target: scaffold0241 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 2516 - 2466
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  2516 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 2466  T

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Target: scaffold0241; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 3134 - 3084
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  3134 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 3084  T

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Target: scaffold0111 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 12633 - 12683
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  12633 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 12683  T

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Target: scaffold0077 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 34291 - 34241
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||| |||||||||    
T  34291 ggttttgaagttgtaattggttgttaatagagtagaaaatttgttgaattt 34241  T

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Target: scaffold0064 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 58698 - 58648
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  58698 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 58648  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 31946 - 31896
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| ||||||||  ||||||||||||||||||    
T  31946 ggttttgaagttgtaattggttgttaatagagcagaaaattcgttgaattt 31896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 37253 - 37203
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| ||||||||  ||||||||||||||||||    
T  37253 ggttttgaagttgtaattggttgttaatagagcagaaaattcgttgaattt 37203  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 7484954 - 7484904
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  7484954 ggttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 7484904  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 20566506 - 20566456
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||| ||||||    
T  20566506 ggttttgaagttgtaattggttgttaatagaatagaaaatccgtagaattt 20566456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 11375 - 11424
Alignment:
Q  203 gttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    |||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  11375 gttttgaagttgtaattggttgttaatagagtagaaaatccgttgaattt 11424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1283 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1283
Description:

Target: scaffold1283; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 568 - 618
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| ||||||||  |||||||||    
T  568 ggttttgaagttgtaattggttgttaatagagtagaaaataagttgaattt 618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 72896 - 72846
Alignment:
Q  202 ggttttgtagttgtaattggttattaatagattagaaaattcgttgaattt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| | ||||||||    
T  72896 ggttttgaagttgtaattggttgttaatagaatagaaaatccattgaattt 72846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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