View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_low_36 (Length: 252)

Name: NF8521_low_36
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_low_36
NF8521_low_36
[»] chr3 (9 HSPs)
chr3 (1-242)||(2395820-2396061)
chr3 (130-221)||(15525726-15525818)
chr3 (112-220)||(27844666-27844773)
chr3 (5-56)||(2390071-2390122)
chr3 (145-219)||(51380974-51381047)
chr3 (154-226)||(31984424-31984495)
chr3 (52-110)||(2389678-2389736)
chr3 (159-226)||(8029226-8029292)
chr3 (144-227)||(39028137-39028219)
[»] chr2 (8 HSPs)
chr2 (107-221)||(14389282-14389396)
chr2 (111-220)||(29923908-29924016)
chr2 (111-220)||(14922729-14922838)
chr2 (141-220)||(5357615-5357693)
chr2 (111-200)||(4964129-4964218)
chr2 (110-168)||(9371992-9372050)
chr2 (111-156)||(14389416-14389461)
chr2 (158-219)||(29927744-29927804)
[»] chr6 (2 HSPs)
chr6 (111-200)||(33929939-33930028)
chr6 (135-203)||(29252304-29252372)
[»] chr1 (4 HSPs)
chr1 (139-220)||(22023146-22023227)
chr1 (116-220)||(46518616-46518720)
chr1 (110-221)||(40152696-40152806)
chr1 (147-220)||(68957-69028)
[»] chr4 (5 HSPs)
chr4 (110-209)||(55583706-55583805)
chr4 (111-226)||(45073184-45073295)
chr4 (145-220)||(24699414-24699488)
chr4 (140-220)||(56027748-56027828)
chr4 (145-220)||(18489635-18489709)
[»] chr8 (7 HSPs)
chr8 (111-221)||(38137426-38137536)
chr8 (151-227)||(9780389-9780464)
chr8 (109-168)||(44327556-44327615)
chr8 (115-168)||(38102196-38102249)
chr8 (113-204)||(7409375-7409466)
chr8 (166-200)||(32703246-32703280)
chr8 (152-200)||(40832932-40832980)
[»] chr5 (2 HSPs)
chr5 (111-220)||(41732955-41733064)
chr5 (152-217)||(9379229-9379293)
[»] chr7 (2 HSPs)
chr7 (145-221)||(6687752-6687828)
chr7 (158-219)||(24972945-24973005)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2396061 - 2395820
Alignment:
Q  1 agcgattttgaaagtattttcactcctcacaacctggctaaaatgggatggaatgacctatggaaaacttggcagtcatgaacctcaaaagagtagtatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  2396061 agcgattttgaaagtattttcactcctcacaacctggctaaaatgggatggaatgacctatggaaaacttggcagtcaagaacctcaaaagagtagtatt 2395962  T
Q  101 tctaagttaagaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttt 200  Q
    | ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  2395961 tgtaagttaagaagaatgttgttcatacactgtgtttgactgaaaaacacaagttatttaccaatatagcctcatcggtagttaactgccgatggatttt 2395862  T
Q  201 taaccggcgacagttaactgctgatgagcaaaaatctctctg 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  2395861 taaccggcgacagttaactgccgatgagcaaaaatctctctg 2395820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 15525726 - 15525818
Alignment:
Q  130 ttgtgtttggctgaaaaacacaagtaatttaccaatatagcatc-atcggtagttaactgccgatggatttttaaccggcgacagttaactgc 221  Q
    |||||||||||||| ||| |||||||||||||||||||| | || |||||||||||||| | || | |||| |||||||||||||||||||||    
T  15525726 ttgtgtttggctgagaaaaacaagtaatttaccaatataacctcaatcggtagttaactacggaggaatttgtaaccggcgacagttaactgc 15525818  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 27844773 - 27844666
Alignment:
Q  112 aagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgac 211  Q
    ||||||||||||||  ||| ||||||| ||||||||||  ||||||||| |||||||   ||||||| |||||||| ||||| || ||||||||| || |    
T  27844773 aagaatgttgttcacgcatagtgtttgactgaaaaacatcagtaatttatcaatataatttcatcggcagttaactaccgat-gaattttaaccgacggc 27844675  T
Q  212 agttaactg 220  Q
    |||||||||    
T  27844674 agttaactg 27844666  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 2390122 - 2390071
Alignment:
Q  5 attttgaaagtattttcactcctcacaacctggctaaaatgggatggaatga 56  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  2390122 attttcaaagtattttcactcctcacaacatagctaaaatgggatggaatga 2390071  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 51380974 - 51381047
Alignment:
Q  145 aaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaact 219  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| | ||||||| ||||||| |||| |||||||||    
T  51380974 aaacactagtaatttatcaatataacatcatcggtagttaacagtcgatgga-ttttaactggcggcagttaact 51381047  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 31984495 - 31984424
Alignment:
Q  154 taatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactgctgatg 226  Q
    |||||||| |||||| |||||| || ||||||| ||||||| ||||| |||||||| ||||||||||||||||    
T  31984495 taatttacaaatataacatcataggcagttaaccgccgatgaatttt-aaccggcggcagttaactgctgatg 31984424  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 2389736 - 2389678
Alignment:
Q  52 aatgacctatggaaaacttggcagtcatgaacctcaaaagagtagtatctctaagttaa 110  Q
    ||||||| ||| ||||||||||||| | ||| ||||||||||||||||| |||||||||    
T  2389736 aatgaccaatgaaaaacttggcagttacgaaactcaaaagagtagtatccctaagttaa 2389678  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 8029292 - 8029226
Alignment:
Q  159 taccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactgctgatg 226  Q
    |||||||||| | ||||||| | ||||||||||||| | ||||||||| |||||||||||||| ||||    
T  8029292 taccaatataacctcatcggcaattaactgccgatg-agttttaaccgacgacagttaactgccgatg 8029226  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 39028137 - 39028219
Alignment:
Q  144 aaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactgctgatga 227  Q
    ||||||| |||||||||| |||||| | | ||||| | ||||||| ||||| ||||| |||||||| ||||||||||| |||||    
T  39028137 aaaacactagtaatttacaaatataaccttatcggcaattaactgtcgatgaatttt-aaccggcggcagttaactgccgatga 39028219  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 14389282 - 14389396
Alignment:
Q  107 ttaagaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccg 206  Q
    ||||||||||||||||||  | ||  |||||||||||||||||| |||||||||| |||||| | ||||| |||||||||||||||| ||||||||||||    
T  14389282 ttaagaagaatgttgttctcatatattgtttggctgaaaaacaccagtaatttactaatataacctcatcagtagttaactgccgattgatttttaaccg 14389381  T
Q  207 gcgacagttaactgc 221  Q
    ||  |||||||||||    
T  14389382 gcagcagttaactgc 14389396  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 29924016 - 29923908
Alignment:
Q  111 gaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcga 210  Q
    ||||||||||| |||||||| ||||||||||| ||||||| |||||||||| |||||| | ||||||| |||||| ||| |||||| ||||||||||||     
T  29924016 gaagaatgttggtcatacatggtgtttggctggaaaacaccagtaatttactaatataacctcatcggcagttaattgctgatgga-ttttaaccggcgg 29923918  T
Q  211 cagttaactg 220  Q
    ||||||||||    
T  29923917 cagttaactg 29923908  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 14922838 - 14922729
Alignment:
Q  111 gaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcga 210  Q
    ||||||||||||||| | || || |||||||||||||||  | |||||| |||||||| |  |||||||||||||||||||||| ||||||||| ||||     
T  14922838 gaagaatgttgttcacatatagtatttggctgaaaaacaacaataattttccaatataaccccatcggtagttaactgccgatgaatttttaactggcgg 14922739  T
Q  211 cagttaactg 220  Q
    ||||||||||    
T  14922738 cagttaactg 14922729  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 5357693 - 5357615
Alignment:
Q  141 tgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactg 220  Q
    |||||||||| ||||||||||||||||| | ||||||| ||||||||| |||||||  |||||||||| |||||||||||    
T  5357693 tgaaaaacactagtaatttaccaatataacctcatcggcagttaactgtcgatgga-atttaaccggcaacagttaactg 5357615  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 4964218 - 4964129
Alignment:
Q  111 gaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttt 200  Q
    ||||||||||||||| | ||  |||||||||| ||||||| |||||||||| ||||||   ||||||| ||||||||||  |||||||||    
T  4964218 gaagaatgttgttcacaaataatgtttggctggaaaacaccagtaatttactaatataatctcatcggcagttaactgctaatggatttt 4964129  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 9371992 - 9372050
Alignment:
Q  110 agaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatata 168  Q
    |||||||| ||||||| |||  ||||||||||||||| ||||| |||||||||||||||    
T  9371992 agaagaattttgttcacacaaagtgtttggctgaaaagcacaaataatttaccaatata 9372050  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 14389461 - 14389416
Alignment:
Q  111 gaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaa 156  Q
    |||||||| |||||| || | |||||||||||||||||||||||||    
T  14389461 gaagaatggtgttcacacgtagtgtttggctgaaaaacacaagtaa 14389416  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 29927744 - 29927804
Alignment:
Q  158 ttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaact 219  Q
    ||||||||||| | ||||||| |||||||||| |||||| ||||||||| ||| ||||||||    
T  29927744 ttaccaatataacctcatcggcagttaactgctgatgga-ttttaaccgacgatagttaact 29927804  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 33930028 - 33929939
Alignment:
Q  111 gaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttt 200  Q
    ||||||||||||||| ||||  |||||||||| ||||||| ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  33930028 gaagaatgttgttcacacataatgtttggctggaaaacaccagtaatttatcaatatactctcatcggtagttaactgccgatggatttt 33929939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 29252304 - 29252372
Alignment:
Q  135 tttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaa 203  Q
    |||| |||||||||||  ||||||||  |||||| |  |||||| ||||||||||||||| ||||||||    
T  29252304 tttgactgaaaaacaccggtaatttattaatataactccatcggcagttaactgccgatgaatttttaa 29252372  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 22023146 - 22023227
Alignment:
Q  139 gctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactg 220  Q
    |||| ||||||| ||||||||||| ||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  22023146 gctggaaaacaccagtaatttacctatataacctcatcggcagttaactgccgatggatttttaaccgacgacagttaactg 22023227  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 46518616 - 46518720
Alignment:
Q  116 atgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagtt 215  Q
    |||||||||| |||| |||||||| |||||||||| |||||||||||||||||    |||||| | |||||||| |||| |||| ||||||| |||||||    
T  46518616 atgttgttcacacatagtgtttggttgaaaaacaccagtaatttaccaatataattccatcggcatttaactgctgatgaatttataaccggtgacagtt 46518715  T
Q  216 aactg 220  Q
    |||||    
T  46518716 aactg 46518720  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 40152696 - 40152806
Alignment:
Q  110 agaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcg 209  Q
    |||||||||||||||| |||||||||| || |||||||||  |||||||||||||||| |   || ||  ||||||||||||||| |||||||||||||     
T  40152696 agaagaatgttgttcacacattgtgttcggttgaaaaacatcagtaatttaccaatat-gacccaccgacagttaactgccgatgaatttttaaccggct 40152794  T
Q  210 acagttaactgc 221  Q
     || ||||||||    
T  40152795 gcatttaactgc 40152806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 69028 - 68957
Alignment:
Q  147 acacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactg 220  Q
    |||| ||||||||| ||||||| |||||||||||||||| ||  ||| || ||||||||| |||||||||||||    
T  69028 acactagtaatttatcaatataacatcatcggtagttaagtg-tgat-gaattttaaccgacgacagttaactg 68957  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 55583706 - 55583805
Alignment:
Q  110 agaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcg 209  Q
    |||||||||||||||| ||||  |||||||||||||||||  ||||||||||||||||| |  ||| ||||||||| ||  |||||||||||||||||||    
T  55583706 agaagaatgttgttcacacataatgtttggctgaaaaacatcagtaatttaccaatataaccccattggtagttaattgttgatggatttttaaccggcg 55583805  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 45073184 - 45073295
Alignment:
Q  111 gaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcga 210  Q
    ||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||| | | ||||  ||||||   |||||||| ||||||||||||     
T  45073184 gaagaatgttgttcacacatggtgtttggctggaaaacaccagtaatttaccaatataaccttatcgacagttaa---ccgatgga-ttttaaccggcgg 45073279  T
Q  211 cagttaactgctgatg 226  Q
    ||||||||||| ||||    
T  45073280 cagttaactgccgatg 45073295  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 24699488 - 24699414
Alignment:
Q  145 aaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactg 220  Q
    |||||| ||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  24699488 aaacactagtaatttatcaacataacatcatcggtagttaactgccgatgga-ttttaactggcggcagttaactg 24699414  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 56027748 - 56027828
Alignment:
Q  140 ctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactg 220  Q
    ||||||||||| ||||| |||||||||||    |||||| ||||||||| ||||| |||||||||||| ||||||||||||    
T  56027748 ctgaaaaacaccagtaacttaccaatataattccatcggcagttaactgtcgatgaatttttaaccggtgacagttaactg 56027828  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 18489635 - 18489709
Alignment:
Q  145 aaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactg 220  Q
    |||||| |||||||||||||||||   ||||||| |||||||||| |||||| ||||||||| || ||||||||||    
T  18489635 aaacactagtaatttaccaatataatttcatcggcagttaactgctgatgga-ttttaaccgacggcagttaactg 18489709  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 38137426 - 38137536
Alignment:
Q  111 gaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcga 210  Q
    ||||||||||||| | ||||   ||||||| |||||| || |||||||||| |||||| | |||||||||||||| ||||||| |||||||||||| |||    
T  38137426 gaagaatgttgttgacacatgtggtttggccgaaaaataccagtaatttacaaatataacctcatcggtagttaattgccgatagatttttaaccgacga 38137525  T
Q  211 cagttaactgc 221  Q
     ||||||||||    
T  38137526 tagttaactgc 38137536  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 9780389 - 9780464
Alignment:
Q  151 aagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactgctgatga 227  Q
    |||||||||| ||||||| |||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  9780389 aagtaatttatcaatataacatcatcgatagttaactgccgat-gaattttaaccgacgacagttaactgctgatga 9780464  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 44327615 - 44327556
Alignment:
Q  109 aagaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatata 168  Q
    ||||||||||||||||| ||||  ||||||| |||||||||||||||||||| |||||||    
T  44327615 aagaagaatgttgttcacacataatgtttggttgaaaaacacaagtaatttatcaatata 44327556  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 38102249 - 38102196
Alignment:
Q  115 aatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatata 168  Q
    |||| |||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  38102249 aatgctgttcacacatggtgtttggctgaaaaacaccagtaatttaccaatata 38102196  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 7409375 - 7409466
Alignment:
Q  113 agaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaac 204  Q
    ||||||||||||| || | ||||||||||||||||||  |  |||||| ||||||| |  |||||  ||||||||| ||||| |||||||||    
T  7409375 agaatgttgttcacacgtagtgtttggctgaaaaacatcaccaatttatcaatataactccatcgacagttaactgtcgatgaatttttaac 7409466  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 32703246 - 32703280
Alignment:
Q  166 atagcatcatcggtagttaactgccgatggatttt 200  Q
    |||||||||||||||||||||||||||| ||||||    
T  32703246 atagcatcatcggtagttaactgccgatagatttt 32703280  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 40832932 - 40832980
Alignment:
Q  152 agtaatttaccaatatagcatcatcggtagttaactgccgatggatttt 200  Q
    ||||||||||||||||| | ||||||||||||| ||| ||||| |||||    
T  40832932 agtaatttaccaatataacctcatcggtagttacctgtcgatgaatttt 40832980  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 41733064 - 41732955
Alignment:
Q  111 gaagaatgttgttcatacattgtgtttggctgaaaaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcga 210  Q
    |||||||||| |||| |||| ||||||||||||||||||  | ||||||| ||||||| | |||||||  || | ||| ||||| |||||||| ||||||    
T  41733064 gaagaatgttattcacacatagtgtttggctgaaaaacatcaataatttatcaatataacttcatcggcggtaacctgtcgatgaatttttaatcggcga 41732965  T
Q  211 cagttaactg 220  Q
    ||||||||||    
T  41732964 cagttaactg 41732955  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 9379229 - 9379293
Alignment:
Q  152 agtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaa 217  Q
    ||||||||| ||||||| | |||||||| |||||||| ||||| ||||| |||||||| |||||||    
T  9379229 agtaatttatcaatataacttcatcggttgttaactgtcgatgaatttt-aaccggcggcagttaa 9379293  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 6687828 - 6687752
Alignment:
Q  145 aaacacaagtaatttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaactgc 221  Q
    |||||| || |||||||| |||||   ||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  6687828 aaacaccagcaatttacctatataatttcatcggcaattaactgccgatgaatttttaaccggcgacagttaactgc 6687752  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 24972945 - 24973005
Alignment:
Q  158 ttaccaatatagcatcatcggtagttaactgccgatggatttttaaccggcgacagttaact 219  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||||||||||||  ||||||||    
T  24972945 ttaccaatataacatcatcgacagttaactgccgatgga-ttttaaccggcggtagttaact 24973005  T

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