View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_38 (Length: 245)
Name: NF8521_low_38
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_38 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 12011234 - 12010991
Alignment:
| Q |
2 |
atggaattgagccaacgattgagcattatgggtgcatggttgatcttcttgggagagggggtaagttgctagaggcagaagaaatgataaaagagatgcc |
101 |
Q |
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| T |
12011234 |
atggaattgagccgacgattgagcattatgggtgcatggttgatcttcttgggagagggggtaagttgctagaggcagaggaagtgataaaagggatgcc |
12011135 |
T |
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| Q |
102 |
atgcaaacctgacgtggttattttgggagctttgttggcagctagcaagaataacggaaacactgaggttgctgaaagagttgtgaaacaaattcttact |
201 |
Q |
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| T |
12011134 |
atggaaacctgacgtggttattttgggagctttattggcagctagcaagaataatggaaacaccgaggttgctgaaagggttgtgaaacaaattcttact |
12011035 |
T |
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| Q |
202 |
ctggatcctcataatcatggagttcacgtttctttgtcgaatat |
245 |
Q |
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| T |
12011034 |
ctggatcctcataatcatggtgttcatgtttctttgtcgaatat |
12010991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 72 - 245
Target Start/End: Complemental strand, 38183212 - 38183036
Alignment:
| Q |
72 |
agaggcagaagaaatgataaaagagatgccatgcaaacctgacgtggtt---attttgggagctttgttggcagctagcaagaataacggaaacactgag |
168 |
Q |
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| T |
38183212 |
agaggcagaggaacttataaaagggatgccatggaaaccaggcgtggttgttattttgggatctttgctggcatctagcaagaataatggcaacactgag |
38183113 |
T |
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| Q |
169 |
gttgctgaaagagttgtgaaacaaattcttactctggatcctcataatcatggagttcacgtttctttgtcgaatat |
245 |
Q |
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| T |
38183112 |
ttggctgaaagagtagcgaaagaaattcttgctctggaaccacataatcatggagctcatgttgctttgtcaaatat |
38183036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 21009553 - 21009325
Alignment:
| Q |
18 |
gattgagcattatgggtgcatggttgatcttcttgggagagggggtaagttgctagaggcagaagaaatgataaaagagatgccatgcaaacctgacgtg |
117 |
Q |
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| T |
21009553 |
gattgagcgttatgaatggatggttgatcttcttgggagagctggtaagtttctagaggctgaggaatgtataaaagggatgccgcggaaacctgatgtg |
21009454 |
T |
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| Q |
118 |
gttattttgggagctttgt--tggcagctagcaagaataacggaaacactgaggttgctgaaagagttgtgaaacaaattcttactctggatcctcataa |
215 |
Q |
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| T |
21009453 |
gttattttggaagctttgtaaaagcagctagcaagaatgatggaaatgccgaggttgatgaaagagtggtgaaatgcattcttactctaga-cctgataa |
21009355 |
T |
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| Q |
216 |
tcatggagttcacgtttctttgtcgaatat |
245 |
Q |
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| T |
21009354 |
tcacggaattcatattgctttgtcaaatat |
21009325 |
T |
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