View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_low_39 (Length: 244)

Name: NF8521_low_39
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_low_39
NF8521_low_39
[»] chr2 (3 HSPs)
chr2 (19-215)||(11330583-11330779)
chr2 (19-72)||(7178122-7178175)
chr2 (144-223)||(37423059-37423137)
[»] scaffold0288 (1 HSPs)
scaffold0288 (144-233)||(9860-9949)
[»] chr1 (3 HSPs)
chr1 (158-244)||(5362808-5362892)
chr1 (142-225)||(35409005-35409088)
chr1 (145-197)||(3523174-3523226)
[»] chr5 (8 HSPs)
chr5 (148-226)||(41658759-41658837)
chr5 (136-226)||(41685853-41685942)
chr5 (144-189)||(37097872-37097917)
chr5 (156-228)||(864428-864501)
chr5 (145-182)||(17896035-17896072)
chr5 (171-244)||(38646660-38646732)
chr5 (139-191)||(29694191-29694243)
chr5 (136-172)||(32497212-32497248)
[»] chr4 (3 HSPs)
chr4 (143-193)||(6861263-6861313)
chr4 (146-225)||(33827431-33827509)
chr4 (144-197)||(20619746-20619799)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 11330779 - 11330583
Alignment:
Q  19 atacaattcccaaagcaatgtttcggacctgcaacaaaagaattcggatattaaatgagtacagtagaggaaaatnnnnnnnctttaggctaatagcttc 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  11330779 atacaattcccaaagcaatgttccggacctgcaacaaaagaattcggatattaaatgagtacagtagaggaaaataaaaaaactttaggctaatagcttc 11330680  T
Q  119 agttaaattgggttatagtcccacataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccgg 215  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330679 agttaaattgggttatagtcccacataggtagctcggttggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccgg 11330583  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 7178122 - 7178175
Alignment:
Q  19 atacaattcccaaagcaatgtttcggacctgcaacaaaagaattcggatattaa 72  Q
    ||||||||||||| |||||||| |||||||||||||||| |||  |||||||||    
T  7178122 atacaattcccaatgcaatgttccggacctgcaacaaaataatcaggatattaa 7178175  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 37423137 - 37423059
Alignment:
Q  144 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaac 223  Q
    |||||||||| || ||||||||||||||  ||||||||| | ||||||| | || ||| ||||||| |||||||||||||    
T  37423137 taggtagctcagttggtgagctaagggatattgaaggagttataagaagaaagtcccgggttcgat-cccggaaactaac 37423059  T

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Target: scaffold0288 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 9860 - 9949
Alignment:
Q  144 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttccccct 233  Q
    |||||||||| || |||||||| ||||| ||||||||||||||||||||||||| ||| ||| ||  ||| |||||||||||||||||||    
T  9860 taggtagctcagttggtgagctcagggatgttgaaggagatttaagaaggaggtcccgggtttgactcccagaaactaacatttccccct 9949  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 5362808 - 5362892
Alignment:
Q  158 ggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaaca 244  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |||| || || |||||||||||||| ||||||||||| ||||    
T  5362808 ggtgagctaagggaggttgaaggagatttaagaaggaggtcccgtgttcaat-cctggaaactaacattt-ccccttccctccaaca 5362892  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 35409088 - 35409005
Alignment:
Q  142 cataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacat 225  Q
    ||||| ||| |||||  |||| ||||||| ||||||||||| || ||| |||||||||||||||  ||| || |||||||||||    
T  35409088 catagatagttcggttagtgaactaagggtcgttgaaggagtttaaaggaggaggttccgagtttcatctccagaaactaacat 35409005  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 3523226 - 3523174
Alignment:
Q  145 aggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggt 197  Q
    |||||||||||| |||||| ||||||||  |||||||| |||||| |||||||    
T  3523226 aggtagctcggttggtgagataagggacaatgaaggagttttaagcaggaggt 3523174  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 41658837 - 41658759
Alignment:
Q  148 tagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatt 226  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||| | |||  || ||| ||||||||||||||||    
T  41658837 tagctcggttggtgagctaagggacgtcgaaggaggtttaagaaggagttcccggatttgattcccggaaactaacatt 41658759  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 41685942 - 41685853
Alignment:
Q  136 gtcccacataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatt 226  Q
    |||||||||||||||||| ||||||||  ||||||||||  |||||||||| |||||||||| | | |||| || ||||||||||||||||    
T  41685942 gtcccacataggtagctcagtcggtgatataagggacgtcaaaggagatttgagaaggaggtcctgggttccat-cccggaaactaacatt 41685853  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 37097872 - 37097917
Alignment:
Q  144 taggtagctcggtcggtgagctaagggacgttgaaggagatttaag 189  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  37097872 taggtagctcggttggtgagctaagggacattgaaggagatttaag 37097917  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 864428 - 864501
Alignment:
Q  156 tcggtgagctaa-gggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttc 228  Q
    |||||||||||| |||||| | |||||| || ||| ||||| | ||| ||| ||||||||||||||||||||||    
T  864428 tcggtgagctaaagggacgatcaaggagtttgaaggaggagatcccgggtttgatccccggaaactaacatttc 864501  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 17896035 - 17896072
Alignment:
Q  145 aggtagctcggtcggtgagctaagggacgttgaaggag 182  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  17896035 aggtagctcggttggtgagctaagggacattgaaggag 17896072  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 38646660 - 38646732
Alignment:
Q  171 acgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaaca 244  Q
    ||||||||||||||||| || ||| |||  ||||||||||| || ||||||||||||| ||||  |||||||||    
T  38646660 acgttgaaggagattta-gatggatgttttgagttcgatcctcgaaaactaacatttctccctctcctctaaca 38646732  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 29694191 - 29694243
Alignment:
Q  139 ccacataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaa 191  Q
    |||||||||||||||||| ||| | | |||| | |||||||||||||||||||    
T  29694191 ccacataggtagctcggttggtaaccaaaggaatgttgaaggagatttaagaa 29694243  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 32497248 - 32497212
Alignment:
Q  136 gtcccacataggtagctcggtcggtgagctaagggac 172  Q
    |||||||||||||||||||||  ||||||||||||||    
T  32497248 gtcccacataggtagctcggttagtgagctaagggac 32497212  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 6861263 - 6861313
Alignment:
Q  143 ataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaagg 193  Q
    |||||||| ||||| ||||||||||||||| ||||| ||||||||||||||    
T  6861263 ataggtagttcggttggtgagctaagggacattgaaagagatttaagaagg 6861313  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 33827431 - 33827509
Alignment:
Q  146 ggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacat 225  Q
    ||||||||| | |||| | ||||| |||||||||||| |||||| |||||||  || ||||||| |||||||||||||||    
T  33827431 ggtagctcgattggtgcgttaaggaacgttgaaggagctttaaggaggaggtctcgggttcgat-cccggaaactaacat 33827509  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 20619746 - 20619799
Alignment:
Q  144 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggt 197  Q
    |||| |||||||| ||||||||||||||||||| || || || |||||||||||    
T  20619746 taggcagctcggttggtgagctaagggacgttgtagcagtttgaagaaggaggt 20619799  T

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