View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521_low_4 (Length: 535)
Name: NF8521_low_4
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 22 - 525
Target Start/End: Original strand, 500131 - 500629
Alignment:
| Q |
22 |
acatcagacggagcaacatcatagaaaacagtttgtttcaaatttaaccggcaatcagcaattgtagccatttcatccaaacaccatgtggatgaagcat |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
500131 |
acatcagacggagcaacatcatagaaaacagtgtgattcaaatttaactggcaatcagcaattgtagccatttcatccaaacaccatgttgatgaagcat |
500230 |
T |
|
| Q |
122 |
aatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaaatagaacgacctttgttgagctgtgcatcatcctt |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
500231 |
aatcttttgagaaaataataatagaaacacgtgattgtcgaattgcatgaagaagttgagttgaaatagaatgacctttgttgagctgtgcatcatcctt |
500330 |
T |
|
| Q |
222 |
aaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatcta |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
500331 |
aaaggtgaaaataccttttctaatgagatgagcatagagatgatcaacaaaagtgttgcgtgtgtcggaacctctgaaactgataaacacatcatatcta |
500430 |
T |
|
| Q |
322 |
tagattagctttggatgctgctattagaagaagaactacaacttgacagatcccaaaaccgtcgcttaggcattgcacctatctgctataagatacgaat |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
500431 |
-----tagctttggatgctgctattagaagaagaactacaacttgacagatcccaaaaccgtcgcttaggcattgcacctatctgctataagatacgaac |
500525 |
T |
|
| Q |
422 |
gaaaatgtttctaactttgaatcaattatagtataaagaaacgatcgtaaaagactagttctattgacaatgccgatattgttaggttgtacgcctattc |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
500526 |
gaaaatgtttctaactttgaatcaattatagtataaagaaacgatcttaaaagacaagttctattgacaatgccgatattgctaggttgtatacctattc |
500625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 87 - 314
Target Start/End: Original strand, 25436331 - 25436558
Alignment:
| Q |
87 |
agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa |
186 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| |||| ||||| |||||||||| | |||||||| | |||| |
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| T |
25436331 |
agccatttcatccaaacaccatgttgatgaagcataatctcttgagaaaacaatgatacaaacccgtgaccgtcgaattgcttgtagaagttggggtgaa |
25436430 |
T |
|
| Q |
187 |
atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt |
286 |
Q |
| |
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|| | ||||| | |||||| |||||||| ||||| |||||||||||||||| ||||||| | |||||||||| |||||| ||||| || | |
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| T |
25436431 |
atggcttctcctttttggagctgcttgtcatccttgaaggtaaaaataccttttctaactagatgagagtggagatgatcaacaaaagaattgcgggtct |
25436530 |
T |
|
| Q |
287 |
cggaacctctaaaactgataaacacatc |
314 |
Q |
| |
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| ||||||||||||||||| |||||||| |
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|
| T |
25436531 |
cagaacctctaaaactgatgaacacatc |
25436558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 87 - 324
Target Start/End: Complemental strand, 25484508 - 25484271
Alignment:
| Q |
87 |
agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa |
186 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||||||| || ||||||| ||||| ||| ||||||| | |||||||| | |||| |
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| T |
25484508 |
agccatttcatccaaacaccatgttgaagaagcataatctttggagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaa |
25484409 |
T |
|
| Q |
187 |
atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt |
286 |
Q |
| |
|
|| | ||||| | ||||| |||||||| ||||||||||||||||||||| |||||||||| |||||||| ||| |||| | || || |||| |
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| T |
25484408 |
atggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgt |
25484309 |
T |
|
| Q |
287 |
cggaacctctaaaactgataaacacatcatatctatag |
324 |
Q |
| |
|
| |||||||| |||||||| |||||||| ||||||||| |
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|
| T |
25484308 |
cagaacctctgaaactgatgaacacatcgtatctatag |
25484271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 87 - 324
Target Start/End: Complemental strand, 25636749 - 25636512
Alignment:
| Q |
87 |
agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa |
186 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |||||||| || || | | |||||| | | |||||| |||| |
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|
| T |
25636749 |
agccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagttggagtgaa |
25636650 |
T |
|
| Q |
187 |
atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt |
286 |
Q |
| |
|
|| || ||||| | ||| | |||||||| ||||| |||||||||||||| ||||||||||||||||||| ||| |||| |||||||| |||| |
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|
| T |
25636649 |
atggattcgcctttctgaagcgatttgtcatccttgaaggtcgaaataccttttctagtgagatgagcatagagatggtcaacaaaggtgttgcgggtgt |
25636550 |
T |
|
| Q |
287 |
cggaacctctaaaactgataaacacatcatatctatag |
324 |
Q |
| |
|
| | |||||| ||||||||||| ||||||||| ||||| |
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|
| T |
25636549 |
caggacctctgaaactgataaatacatcatatttatag |
25636512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 322
Target Start/End: Complemental strand, 25442557 - 25442322
Alignment:
| Q |
87 |
agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa |
186 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |||||||| || || | | |||||| | | |||||| |||| |
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|
| T |
25442557 |
agccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagttggagtgaa |
25442458 |
T |
|
| Q |
187 |
atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt |
286 |
Q |
| |
|
|| || ||||| | ||| | |||||||| ||| |||||||||||||||| |||||||| | |||||||| ||| |||| | ||||| |||| |
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| T |
25442457 |
atggattcgcctttctgaagcgatttgtcatccttgaagacgaaaataccttttctagtgagatgatcgtagagatggtcaacaaaggaattgcgggtgt |
25442358 |
T |
|
| Q |
287 |
cggaacctctaaaactgataaacacatcatatctat |
322 |
Q |
| |
|
| | ||||||||||||||| |||||||| ||||||| |
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|
| T |
25442357 |
caggacctctaaaactgatgaacacatcgtatctat |
25442322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 25478952 - 25479049
Alignment:
| Q |
226 |
gtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctata |
323 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||| |||| || || || ||||| |||||| |||||||||||||| || |||||||| |
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|
| T |
25478952 |
gtgaaaataccttttctagtgagatgagcatagagatggtcagcaaaggttttacgggtgtcaatacctctgaaactgataaacacgtcgtatctata |
25479049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 324
Target Start/End: Original strand, 35105988 - 35106099
Alignment:
| Q |
213 |
atcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacaca |
312 |
Q |
| |
|
||||||||| |||| |||||||| ||||| | ||||||||||| |||||||| ||||||||||||| ||||| | |||||| |||||||||||||| |
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|
| T |
35105988 |
atcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcgacaaaagtgttgcgcgtgtctggacctctgaaactgataaacacg |
35106087 |
T |
|
| Q |
313 |
tcatatctatag |
324 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
35106088 |
tcgtatctatag |
35106099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 324
Target Start/End: Original strand, 35169648 - 35169759
Alignment:
| Q |
213 |
atcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacaca |
312 |
Q |
| |
|
||||||||| |||| ||||| ||| |||||| | ||||||||||| ||||||||| |||||||||| || ||||| | ||||| ||||||||||||||| |
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|
| T |
35169648 |
atcatccttgaaggcgaaaacaccctttctagttagatgagcataaagatgatcaacaaaagtgttacgggtgtcagcgcctctgaaactgataaacaca |
35169747 |
T |
|
| Q |
313 |
tcatatctatag |
324 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
35169748 |
tcgtatttatag |
35169759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 35177955 - 35178050
Alignment:
| Q |
229 |
aaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctatag |
324 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||| ||||||||||||| ||||| | |||||| |||||||||||||| || ||| ||||| |
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|
| T |
35177955 |
aaaataccttttcttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtctggacctctgaaactgataaacacgtcgtatttatag |
35178050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 35055076 - 35055173
Alignment:
| Q |
214 |
tcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacac |
311 |
Q |
| |
|
|||||||| |||| |||||||||||||| | ||||||||||| ||||||||| ||||| | ||||| ||||| | ||||||||||||||| ||||| |
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|
| T |
35055076 |
tcatccttgaaggcaaaaataccttttcttgttagatgagcataaagatgatcaacaaaactattgcgagtgtcaggacctctaaaactgatgaacac |
35055173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 35047044 - 35047128
Alignment:
| Q |
232 |
ataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcat |
316 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||| |
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|
| T |
35047044 |
ataccttttctgatgagatgatgatagagatgatcgatgaaagtgttgcgagtgtcggtgcctctgaaactgataaacacatcat |
35047128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 35183971 - 35184048
Alignment:
| Q |
247 |
agatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctatag |
324 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||| ||||| | ||| | ||||||||||||||||||||||||||| |
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|
| T |
35183971 |
agatgagcatgaagatgatcaacaaaagtgctgcgggtgtcagcaccacggaaactgataaacacatcatatctatag |
35184048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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