View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_40 (Length: 240)
Name: NF8521_low_40
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 42888125 - 42888348
Alignment:
| Q |
17 |
agtttgcatgataaaatgtgcatatgatttgccagaaagnnnnnnnntccttttcctttttatagtatcaatatatatactgatttttccactgacggtt |
116 |
Q |
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| T |
42888125 |
agtttgcatgataaaatgtgcatatgatttgccagaaagaaaaaaaatccttttcctttttatagtatcaatatatatactgatttttccactgacggtt |
42888224 |
T |
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| Q |
117 |
taaccgtacggactgcattttagtatgtgaacgtgtgatattgtcatcaaaatataggttactgctattatagagaaagattcaccatagaatctaaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42888225 |
taaccgtacggactgcattttagtatgtgaacgtgtgatattgtcatcaaaatataggttactgctattatagagaaagattcaccatagaatctaaatc |
42888324 |
T |
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| Q |
217 |
atatccgtgtcaaagtggtttttc |
240 |
Q |
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| T |
42888325 |
atatccgtgtcaaagtggtttttc |
42888348 |
T |
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