View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_low_5 (Length: 521)

Name: NF8521_low_5
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_low_5
NF8521_low_5
[»] chr7 (10 HSPs)
chr7 (12-401)||(30625863-30626258)
chr7 (448-503)||(30625757-30625812)
chr7 (132-227)||(38973997-38974092)
chr7 (133-227)||(17003436-17003530)
chr7 (132-195)||(8327827-8327890)
chr7 (132-199)||(17302936-17303003)
chr7 (132-173)||(34534806-34534847)
chr7 (63-119)||(17302861-17302918)
chr7 (132-173)||(42265456-42265497)
chr7 (63-122)||(42265381-42265440)
[»] chr5 (5 HSPs)
chr5 (134-227)||(5394003-5394096)
chr5 (135-199)||(2112592-2112656)
chr5 (132-195)||(544046-544109)
chr5 (63-103)||(27650903-27650944)
chr5 (63-122)||(29342306-29342366)
[»] chr8 (14 HSPs)
chr8 (134-227)||(11778503-11778596)
chr8 (132-227)||(28459958-28460053)
chr8 (134-225)||(8785252-8785342)
chr8 (132-196)||(38167490-38167554)
chr8 (132-199)||(18808760-18808827)
chr8 (63-119)||(18808845-18808902)
chr8 (86-122)||(36782839-36782875)
chr8 (88-122)||(8785359-8785393)
chr8 (63-101)||(32612553-32612591)
chr8 (64-102)||(35501164-35501202)
chr8 (132-173)||(36782783-36782824)
chr8 (136-193)||(39644133-39644190)
chr8 (63-103)||(4573078-4573118)
chr8 (191-227)||(33636822-33636858)
[»] chr4 (7 HSPs)
chr4 (132-199)||(51291131-51291198)
chr4 (132-207)||(13404208-13404283)
chr4 (132-198)||(949875-949941)
chr4 (62-122)||(8607683-8607744)
chr4 (63-122)||(52650766-52650826)
chr4 (57-103)||(50086503-50086549)
chr4 (137-225)||(49236729-49236816)
[»] scaffold0062 (1 HSPs)
scaffold0062 (132-226)||(3032-3126)
[»] chr6 (7 HSPs)
chr6 (132-231)||(34184988-34185087)
chr6 (63-122)||(2086778-2086838)
chr6 (58-119)||(2424371-2424433)
chr6 (137-199)||(5924779-5924841)
chr6 (160-225)||(2976103-2976168)
chr6 (132-173)||(34556191-34556232)
chr6 (63-122)||(34185102-34185162)
[»] chr3 (9 HSPs)
chr3 (132-227)||(17517599-17517694)
chr3 (132-227)||(26886022-26886117)
chr3 (132-189)||(50941724-50941781)
chr3 (63-122)||(17517523-17517583)
chr3 (137-199)||(35524284-35524346)
chr3 (131-180)||(7590733-7590782)
chr3 (134-199)||(25299031-25299096)
chr3 (132-196)||(4842639-4842702)
chr3 (63-119)||(26886135-26886191)
[»] scaffold0009 (1 HSPs)
scaffold0009 (132-225)||(168726-168819)
[»] chr1 (6 HSPs)
chr1 (132-199)||(11700441-11700509)
chr1 (140-199)||(11624069-11624128)
chr1 (63-119)||(48872132-48872188)
chr1 (132-199)||(48872207-48872274)
chr1 (132-197)||(9554087-9554152)
chr1 (63-119)||(49446401-49446456)
[»] scaffold0036 (1 HSPs)
scaffold0036 (132-199)||(88282-88349)
[»] chr2 (3 HSPs)
chr2 (63-101)||(18227092-18227131)
chr2 (68-121)||(18671885-18671938)
chr2 (134-199)||(26809047-26809112)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 401
Target Start/End: Complemental strand, 30626258 - 30625863
Alignment:
Q  12 gagatgaaatacaatagatgtcaatctaatatcaacgttaaaaagaaaaatgtcttgttaacgagtgctccggaacactctttaaacattcctaatgaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  30626258 gagatgaaatacaatagatgtcaatctaatatcaacgttaaaaagaaaaaagtcttgttaacgagtgctccggaacactctttaagcattcttaatgaat 30626159  T
Q  112 aaattattcttnnnnnnnnt-----acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcg 206  Q
    |||||||||||        |     ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  30626158 aaattattcttaaaaaaaattaagtacttcaatttccaatacaagaaatgcacaaacttttataaaaccttatccctttaggtgcttaaagagagtctcg 30626059  T
Q  207 aaagcactcgttaacatttcctaaaagaaaaagactaacagcaacgcacactttacaatacaatcttttttatcagtt-aattaatctggattctaataa 305  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  30626058 aaaacactcgttaacatttcctaaaagaaaaagactaacggcaacgcacactttacaatacaatcttttttatcagttaaattaatgtggattctaataa 30625959  T
Q  306 attttgaattttagtaataatcatactttataaaaatttaaatgagacatatatgaattttagtaataatcaataaaagagagtgcagtatctttc 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  30625958 attttgaattttagtaataatcatactttataaaaatttaaatgagacatgtatgaattttagaaataatcaataaaagagagtgcagtatctttc 30625863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 448 - 503
Target Start/End: Complemental strand, 30625812 - 30625757
Alignment:
Q  448 gcttcatccaagatggaaactctatttcattttgtgctcgctctcttatgtcatat 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30625812 gcttcatccaagatggaaactctatttcattttgtgctcgctctcttatgtcatat 30625757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 38974092 - 38973997
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacatttcc 227  Q
    ||||||||||||||| ||| ||||||||||||||| |||||| |||||| ||||  ||||| |||||   ||||| | ||||||||||||||||||    
T  38974092 acttcaatttccaatgcaataaatgcacaaactttcataaaagcttaccactttgagtgctcaaagaatatctcggaggcactcgttaacatttcc 38973997  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 17003436 - 17003530
Alignment:
Q  133 cttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacatttcc 227  Q
    |||||||||||||| ||| ||||||||||||||| |||||| || ||  ||||||||| |||||||||||| ||    |||||||||||||||||    
T  17003436 cttcaatttccaatgcaataaatgcacaaactttcataaaatctgactactttaggtgtttaaagagagtcccggggacactcgttaacatttcc 17003530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 8327890 - 8327827
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaa 195  Q
    ||||||||||||||||||| |||| ||||||||||||||||| ||||||  |||| ||||||||    
T  8327890 acttcaatttccaatacaataaatacacaaacttttataaaatcttaccattttatgtgcttaa 8327827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 17302936 - 17303003
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    ||||||||||||||| ||| ||||||||||||||| | | ||  ||||| ||||||||||||||||||    
T  17302936 acttcaatttccaatgcaataaatgcacaaactttcacagaatattaccactttaggtgcttaaagag 17303003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 34534847 - 34534806
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaa 173  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  34534847 acttcaatttccaatgcaataaatgcacaaacttttataaaa 34534806  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 17302861 - 17302918
Alignment:
Q  63 gtcttgttaacgagtgctcc-ggaacactctttaaacattcctaatgaataaattatt 119  Q
    ||||||||||||||||| || || ||||||||||| |||||||||| || ||||||||    
T  17302861 gtcttgttaacgagtgcccccggtacactctttaagcattcctaataaagaaattatt 17302918  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 42265456 - 42265497
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaa 173  Q
    |||||||||| |||| ||| ||||||||||||||||||||||    
T  42265456 acttcaatttacaatgcaataaatgcacaaacttttataaaa 42265497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 42265381 - 42265440
Alignment:
Q  63 gtcttgttaacgagtgc-tccggaacactctttaaacattcctaatgaataaattattctt 122  Q
    ||||||||||||||||| |||||| |||| ||||| ||||||| ||||| |||||||||||    
T  42265381 gtcttgttaacgagtgcctccggagcact-tttaagcattccttatgaagaaattattctt 42265440  T

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Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 5394003 - 5394096
Alignment:
Q  134 ttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacatttcc 227  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||  | |||| ||||||||||| |||||  ||||||||||||||||||||    
T  5394003 ttcaatttcctatacaagaaatgcacaaactttcataaaatcttactaccttagatgcttaaagagtgtctcagaagcactcgttaacatttcc 5394096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 2112592 - 2112656
Alignment:
Q  135 tcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    |||||||||||| ||| ||||||||||| |||||||||| |||||  |||||| |||||||||||    
T  2112592 tcaatttccaatgcaataaatgcacaaaattttataaaatcttactactttagatgcttaaagag 2112656  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 544046 - 544109
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaa 195  Q
    ||||||||||||||  ||| ||||||||| |||||||||||| |||||  ||||||||||||||    
T  544046 acttcaatttccaacgcaataaatgcacacacttttataaaatcttactactttaggtgcttaa 544109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 27650944 - 27650903
Alignment:
Q  63 gtcttgttaacgagtgc-tccggaacactctttaaacattcc 103  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  27650944 gtcttgttaacgagtacctccggaacactctttaaacattcc 27650903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 29342306 - 29342366
Alignment:
Q  63 gtcttgttaacgagtgctccgg-aacactctttaaacattcctaatgaataaattattctt 122  Q
    ||||||||||||||||| |||| |||||||||||| |||||| || | | |||||||||||    
T  29342306 gtcttgttaacgagtgccccgggaacactctttaagcattccaaaaggagaaattattctt 29342366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 11778503 - 11778596
Alignment:
Q  134 ttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacatttcc 227  Q
    ||||||||| ||| ||| ||||||||||| |||||||||| |||||| ||||||||| ||||||||   |||||| ||||||||||||||||||    
T  11778503 ttcaatttctaatgcaataaatgcacaaaattttataaaatcttaccactttaggtgtttaaagagtacctcgaatgcactcgttaacatttcc 11778596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 28460053 - 28459958
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacatttcc 227  Q
    ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |||| | ||||||||||| |   ||  |||||||||||||||||||    
T  28460053 acttcaatttccaatgcaataaatgcacaaactttaataaaatcttaccacttttgatgcttaaagagtgatccgggagcactcgttaacatttcc 28459958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 8785342 - 8785252
Alignment:
Q  134 ttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacattt 225  Q
    ||||||||||||| ||| |||| |||||| ||| |||||| |||||| |||| ||||||||||||| | | ||| |||||||||||||||||    
T  8785342 ttcaatttccaatgcaataaatacacaaaatttcataaaatcttaccactttgggtgcttaaagagtg-cccgagagcactcgttaacattt 8785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 38167490 - 38167554
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaa 196  Q
    ||||||||||||||||||| ||||||||| ||||| |||||| |||||| |||||  ||||||||    
T  38167490 acttcaatttccaatacaataaatgcacagactttcataaaagcttaccactttatatgcttaaa 38167554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 18808827 - 18808760
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    ||||||||||| ||| ||| ||||||| ||||||| |||||| ||||||  |||||||||||||||||    
T  18808827 acttcaatttctaatgcaataaatgcataaactttcataaaatcttaccattttaggtgcttaaagag 18808760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 18808902 - 18808845
Alignment:
Q  63 gtcttgttaacgagtgctcc-ggaacactctttaaacattcctaatgaataaattatt 119  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||| ||| ||||    
T  18808902 gtcttgttaacgagtgctcccggggcactctttaaacattcctaatgaagaaactatt 18808845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 36782875 - 36782839
Alignment:
Q  86 acactctttaaacattcctaatgaataaattattctt 122  Q
    |||||||||||||||||||||| ||||||||||||||    
T  36782875 acactctttaaacattcctaataaataaattattctt 36782839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 8785393 - 8785359
Alignment:
Q  88 actctttaaacattcctaatgaataaattattctt 122  Q
    ||||||||| |||||||||||||||||||||||||    
T  8785393 actctttaagcattcctaatgaataaattattctt 8785359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 32612553 - 32612591
Alignment:
Q  63 gtcttgttaacgagtgctccggaacactctttaaacatt 101  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  32612553 gtcttgttaacgagtgctcccggacactctttaaacatt 32612591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 35501202 - 35501164
Alignment:
Q  64 tcttgttaacgagtgctccggaacactctttaaacattc 102  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  35501202 tcttgttaacgagtgctccgtgacactctttaaacattc 35501164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 36782824 - 36782783
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaa 173  Q
    |||||||||| |||||||| ||||||||||||||| ||||||    
T  36782824 acttcaattttcaatacaataaatgcacaaactttcataaaa 36782783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 39644190 - 39644133
Alignment:
Q  136 caatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgctt 193  Q
    ||||||||||||||| | ||| ||||||||||||||||  ||||| ||||| ||||||    
T  39644190 caatttccaatacaatagatgtacaaacttttataaaatattaccactttaagtgctt 39644133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 4573078 - 4573118
Alignment:
Q  63 gtcttgttaacgagtgctccggaacactctttaaacattcc 103  Q
    ||||||||||||||||||||||| || ||||||| ||||||    
T  4573078 gtcttgttaacgagtgctccggagcagtctttaagcattcc 4573118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 33636822 - 33636858
Alignment:
Q  191 cttaaagagagtctcgaaagcactcgttaacatttcc 227  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  33636822 cttaaagagtgtcccgaaagcactcgttaacatttcc 33636858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 51291131 - 51291198
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    ||||||||||||||| ||| ||||||||||||||| |||||| ||||||  |||||||||||||||||    
T  51291131 acttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccattttaggtgcttaaagag 51291198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 13404208 - 13404283
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcga 207  Q
    ||||||||||||||   || |||| || ||||||| |||||| |||||| |||||||||||||||||| |||||||    
T  13404208 acttcaatttccaacgtaataaatacataaactttcataaaatcttaccactttaggtgcttaaagagcgtctcga 13404283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 949941 - 949875
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaaga 198  Q
    |||||||||| |||| ||| ||||||||||||||| |||||||||||||  ||| | ||||||||||    
T  949941 acttcaattttcaatgcaataaatgcacaaactttcataaaaccttaccattttggatgcttaaaga 949875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 8607744 - 8607683
Alignment:
Q  62 tgtcttgttaacgagtgc-tccggaacactctttaaacattcctaatgaataaattattctt 122  Q
    |||||||||||||||||| |||| | |||||||||||||||| |||| || |||||||||||    
T  8607744 tgtcttgttaacgagtgcctccgtatcactctttaaacattcttaataaagaaattattctt 8607683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 52650826 - 52650766
Alignment:
Q  63 gtcttgttaacgagtgc-tccggaacactctttaaacattcctaatgaataaattattctt 122  Q
    ||||||||||||||||| ||||||||||||||||||||| |  ||| || |||||||||||    
T  52650826 gtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctt 52650766  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 50086549 - 50086503
Alignment:
Q  57 aaaaatgtcttgttaacgagtgctccggaacactctttaaacattcc 103  Q
    ||||| ||||||||||||||||| |||| | ||||||||||||||||    
T  50086549 aaaaaggtcttgttaacgagtgccccgggaaactctttaaacattcc 50086503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 49236729 - 49236816
Alignment:
Q  137 aatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacattt 225  Q
    ||||| |||||||| |||| |||||| ||||||||||  ||| | |||||| |||||||||||  |||| ||||||| ||| |||||||    
T  49236729 aattttcaatacaataaatacacaaatttttataaaatattatcactttagatgcttaaagagtatctc-aaagcacccgtcaacattt 49236816  T

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Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 3032 - 3126
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacatttc 226  Q
    ||||||||||||| | ||| ||||||||||||||| |||||| |||||  |||| ||||||||||||| |||  | |||||| ||||||||||||    
T  3032 acttcaatttccactgcaataaatgcacaaactttcataaaatcttactactttgggtgcttaaagagtgtcatggaagcacccgttaacatttc 3126  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 34185087 - 34184988
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacatttcctaaa 231  Q
    ||||||||||||||| ||| ||||||||||||||| || ||| ||||||  |||||||||||||| ||  | |||    |||||||||||||||||||||    
T  34185087 acttcaatttccaatgcaataaatgcacaaactttcattaaatcttacccatttaggtgcttaaaaagtatttcggggacactcgttaacatttcctaaa 34184988  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 2086778 - 2086838
Alignment:
Q  63 gtcttgttaacgagtgctc-cggaacactctttaaacattcctaatgaataaattattctt 122  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||| | |||||||||||    
T  2086778 gtcttgttaacgagtgttctcggaacactctttaagcattcctaatggagaaattattctt 2086838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 2424433 - 2424371
Alignment:
Q  58 aaaatgtcttgttaacgagtg-ctccggaacactctttaaacattcctaatgaataaattatt 119  Q
    ||||| ||||||||||||||| |||||| ||||||||||| || |||||||||| ||||||||    
T  2424433 aaaatatcttgttaacgagtgtctccgggacactctttaagcactcctaatgaaaaaattatt 2424371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 5924779 - 5924841
Alignment:
Q  137 aatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    ||||| |||||||| | ||||||||||||| ||||||  ||||| |||| |||||||||||||    
T  5924779 aattttcaatacaatatatgcacaaactttcataaaattttaccacttttggtgcttaaagag 5924841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 2976168 - 2976103
Alignment:
Q  160 aaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacattt 225  Q
    ||||||||||||||  ||||| |||| ||||||||||||| ||| | ||| ||||| |||||||||    
T  2976168 aaacttttataaaatattaccactttgggtgcttaaagagtgtcccaaaaacactctttaacattt 2976103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 34556191 - 34556232
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaa 173  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    
T  34556191 acttcaatttccaatacaataaatgtacaaactttcataaaa 34556232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 34185162 - 34185102
Alignment:
Q  63 gtcttgttaacgagtgc-tccggaacactctttaaacattcctaatgaataaattattctt 122  Q
    ||||||||||| ||||| |||||  |||||||||| |||||||||| || |||||||||||    
T  34185162 gtcttgttaacaagtgcctccggggcactctttaagcattcctaataaagaaattattctt 34185102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 17517599 - 17517694
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacatttcc 227  Q
    |||| |||||||||| ||| ||||||||||||||| ||| || |||||| |||| ||||||||| ||| | | || | ||||||||||||||||||    
T  17517599 actttaatttccaatgcaataaatgcacaaactttcatacaatcttaccactttgggtgcttaatgagtgccccggaggcactcgttaacatttcc 17517694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 26886117 - 26886022
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacatttcc 227  Q
    |||||||||| ||||||||  |||||||||||||| |||||| |||||| |||| | || ||||||||   | || ||||||||||||| ||||||    
T  26886117 acttcaattttcaatacaatgaatgcacaaactttcataaaaacttaccactttggatgtttaaagagtaccccggaagcactcgttaaaatttcc 26886022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 50941724 - 50941781
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggt 189  Q
    ||||||||||||||| ||| ||||||||||||||| |||||| |||||| || |||||    
T  50941724 acttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccactgtaggt 50941781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 17517523 - 17517583
Alignment:
Q  63 gtcttgttaacgagtgctcc-ggaacactctttaaacattcctaatgaataaattattctt 122  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||| || |||| ||||||    
T  17517523 gtcttgttaacgagtgctcccggggcactctttaaacattcctaataaagaaataattctt 17517583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 35524346 - 35524284
Alignment:
Q  137 aatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    ||||||||||| || ||||||| ||||||||||||||  ||||| |||||  |||||||||||    
T  35524346 aatttccaataaaataaatgcataaacttttataaaattttaccactttaaatgcttaaagag 35524284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 7590733 - 7590782
Alignment:
Q  131 tacttcaatttccaatacaagaaatgcacaaacttttataaaaccttacc 180  Q
    ||||| |||||||||||||| |||| |||||||||| |||||| ||||||    
T  7590733 tactttaatttccaatacaataaatacacaaactttcataaaatcttacc 7590782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 25299096 - 25299031
Alignment:
Q  134 ttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    |||||||| |||| ||| ||||||||||||||| |||||| ||||   ||||||||| ||||||||    
T  25299096 ttcaattttcaatgcaataaatgcacaaactttcataaaatcttattactttaggtgtttaaagag 25299031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 4842702 - 4842639
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaa 196  Q
    |||||||||||||||| || |||||| | |||||| |||||| |||||| |||||| ||||||||    
T  4842702 acttcaatttccaatataataaatgctc-aactttcataaaatcttaccactttagatgcttaaa 4842639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 26886191 - 26886135
Alignment:
Q  63 gtcttgttaacgagtgctccggaacactctttaaacattcctaatgaataaattatt 119  Q
    |||| |||||||| ||| || || |||||||||||||||||| ||||| ||||||||    
T  26886191 gtctcgttaacgaatgccccagagcactctttaaacattccttatgaagaaattatt 26886135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 168819 - 168726
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagagagtctcgaaagcactcgttaacattt 225  Q
    |||| ||||||||||| || ||||||||||||||| |||||| |||||| ||||| ||| ||||| || ||| ||  |||| ||||||||||||    
T  168819 actttaatttccaatataataaatgcacaaactttcataaaatcttaccactttaagtgtttaaaaagtgtcccggtagcaatcgttaacattt 168726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 11700441 - 11700509
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttat-aaaaccttacctctttaggtgcttaaagag 199  Q
    ||||||||||||||| ||| ||||||||||||||| || ||||| ||||  ||||||||||||||||||    
T  11700441 acttcaatttccaatgcaataaatgcacaaactttcataaaaactttactactttaggtgcttaaagag 11700509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 11624128 - 11624069
Alignment:
Q  140 ttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    ||||||| ||| ||||||||||||||| |||||| |||||| |||| |||||||||||||    
T  11624128 ttccaatgcaataaatgcacaaactttcataaaatcttaccacttttggtgcttaaagag 11624069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 48872132 - 48872188
Alignment:
Q  63 gtcttgttaacgagtgctccggaacactctttaaacattcctaatgaataaattatt 119  Q
    ||||| ||||||||||| ||||| |||| |||||||||| ||||| |||||||||||    
T  48872132 gtcttattaacgagtgcaccggagcactatttaaacatttctaataaataaattatt 48872188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 48872207 - 48872274
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    |||||||||||||||  || ||||||| ||||||| |||||| |||||| |||| | |||||||||||    
T  48872207 acttcaatttccaatgtaataaatgcataaactttcataaaatcttaccacttttgatgcttaaagag 48872274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 9554087 - 9554152
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaag 197  Q
    |||||||||| |||||||  ||||||||||||||| ||||||  ||||  |||| |||||||||||    
T  9554087 acttcaattttcaatacattaaatgcacaaactttcataaaatattactactttgggtgcttaaag 9554152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 49446401 - 49446456
Alignment:
Q  63 gtcttgttaacgagtgctccggaacactctttaaacattcctaatgaataaattatt 119  Q
    |||||||||||||||| | | || |||||||||| |||||||||| |||||||||||    
T  49446401 gtcttgttaacgagtgtttcaga-cactctttaagcattcctaattaataaattatt 49446456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 88282 - 88349
Alignment:
Q  132 acttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    |||| ||||||||||| || ||||||||||||||| ||||||  ||||| |||| ||| |||||||||    
T  88282 actttaatttccaatataataaatgcacaaactttcataaaatattaccacttttggtacttaaagag 88349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 18227092 - 18227131
Alignment:
Q  63 gtcttgttaacgagtg-ctccggaacactctttaaacatt 101  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  18227092 gtcttgttaacgagtgtctccggaacactctttaaacatt 18227131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 18671938 - 18671885
Alignment:
Q  68 gttaacgagtgctccggaacactctttaaacattcctaatgaataaattattct 121  Q
    ||||||||||||||    |||||||||||||||| |||| ||||||||||||||    
T  18671938 gttaacgagtgctctcagacactctttaaacatttctaaagaataaattattct 18671885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 26809047 - 26809112
Alignment:
Q  134 ttcaatttccaatacaagaaatgcacaaacttttataaaaccttacctctttaggtgcttaaagag 199  Q
    ||||||||||||| ||| ||||||| ||||||| |  ||| |||||| |||| |||||||||||||    
T  26809047 ttcaatttccaatgcaataaatgcataaactttcaataaagcttaccactttgggtgcttaaagag 26809112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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